| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0728 |
|---|
| Symbol | |
|---|
| ID | 4008783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | - |
|---|
| Start bp | 2555158 |
|---|
| End bp | 2557335 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637951956 |
|---|
| Product | putative outer membrane fimbrial usher porin precursor |
|---|
| Protein accession | YP_554576 |
|---|
| Protein GI | 91779368 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGGCG GCGTGCATAT CGTCACGCGC GGAACGAACA TTGATAGTGT TGAGATGGCG
GCAAAAAGAC AGTCCGAATT CACGCGGGGA TTGAGCAGGC AAGCGCGGCG GCGCACCCAT
GCGCTGATGT TCGGTGCGCT CGGCGCCTGT GTCCCGGCGG CGGCGCACGC GCAGGCCGTG
GCGGACGCCG GTGCGCAGTT CAACGGTCAG CGTGACGATG GCGCGAATGC CGTGGAGTCG
GAGCAGGCAA CCGTCGCGAG CGAACATCTG GTGAACCCGG GTGCGGACGG TCCGTCGGCG
GCGCTCGGCT ACGCTTTCAA TACGTTCCGT ACGTCAGGGC AAGGGGCGGC GGATACGCAG
AATTATCTCG GCTTCACTGC CGGCGCCAAT ATCGGCAATT GGCAAGTGCG CGAGCGGGGC
GCGCTCCAGT CCATGACGGG GCGAGGCACG TCGTATCAGA ATATCGCGGC TTACCTGCAG
CGCGACATTC CGTCGTTGAA AAGCCAACTG GTTCTCGGCG ACCAGTTTAC GGACGGCGCG
GTGTTCGACA GCATCGGCTT GCGTGGCGTA AGGGTGGAGA GCATCGATAG CGCAGGGTCC
GCGGCGGTGG CCGGTTATGC ACCGGTGGTG CGCGGCGTGG CGATGTCGAA TGCGCTGGTC
ACGGTCACGC AGAACGGCAA CCTCCTCTAC GAAGCGACGG TTGCGCCCGG ACCGTTTGAG
ATCAACGACG TCGCGGCAAC GGGTTACGGC GGCAATCTGC TTGTCACCGT GACCGAGGCA
GATGGCAGTC GGCACAGTTT CACCGTGCCG TACACCTCCG TCGTGCCGCT TTTGCGGCAG
GCTTCAACGC GGTTCAGCGT GGCCGGCGGC GTGATCCGCG ACCCGCGGAT CAAGCGCCAC
CGCGCGCTCG TGCAAGGCAC GCTCCAGCAC GGTTTCAACG GCATGGTGAC GGGCTACGGC
GGGGCGGTTG CCGCGGACGG CTATCTGTCC GGCCTGCTCG GTGTGGCGGT CGGTACGCCG
ATCGGCGCGC TGTCGGCCGA TATCTCGGCG GCGCAGGCGG ACGTGCCGCA GGCGCGAAGC
ACGCGAGGTA CGAGTCTGCG TATCGGCTAT AGCAAGTTCA TCGAGCAGAC GGATACGAAC
GTTTCGATCG CCGCGTATGG CTATTCGTCC GGCGGCTTCC TTTCGTTACG CGACGCCATG
CTGGGGCGCG ACGCGGCGCC GGCAGACTCT GGCGCGAACG GCGCAGGACG CCGCCGCAAC
CAGCTGCAGA TCTCGCTGAA CCAGCGCCTC GGCGCTGCTG GCGGAACGCT GTATGTTGTC
GGCTCGACAT CGGACTATTG GAACCGTTCG GGCTCCGACA TGCAGTTTCA GATCGGCTAC
AGCGGTGCAT TGCGGGTGGC CGACGCCAAT CTGAACTACA CGGTATCGGT ATCCCGGCAG
CGCACCGGGT TGACCGGGCC AATGAGCAAC CAGGTGTTTG CCACCGTTTC CGTGCCGCTT
GGCAAGGCAG AGCATGCGCC GGTTCTGTCT GCGGGCTTGA TGCATGACAG TCGTGCCGGC
TGGTCGGAGC AGGCAACGCT TGCTGGTTCC GCGGGCGCTG CGGACGAGCT GGGTTACGGC
CTGTATGGAA CGCACTCGGA CCGGTCGGCC ACAGGTGGCG GCAATGTCCA GTACCACGGT
CCATACGCGA ATTTTGGTGG AAGCGCGAGC GGTGGTTCCG GTTACTCGCA GGTTTCGGCG
AACATTCGAG GCTCGGTGTT CGCCCGCAGG GAAGGCATCA CGCTAGCCGG AACACCGGAA
GACGGAACGG ACACTGTCCA GCCGAAGCAC AGCGCAGGCG CTTCTGAATA CCCGGGAGCG
GGCGCGAGCA GTCCCGGCTA TACGGCCGTG CCGCATCTGT TGCCCGGCAA CGTCGATCCG
ATCGAGGTCG GTCCGCAACG CGCTCTGCCC GACAGCAAGG TCCAGCCGTC CAGTCTGGAG
ATGGCGCCGC AGGTAAATGC GGCAGTCGTC ACGCATCACT CCGCGGACGA CAGCATCGCT
TCGAATGTCG CAACCGCGAA CCAGACGGAA GGGGCCGAAC GCCTGATGCT GTTCATGAAT
GCCGTGCCCA TGAAGGTGTA CGCGCGCAAT TCGGTTGTCT CATGGTCGGA TGTGGAGCGC
GGGAACGGGC ATCACTAA
|
|---|
| Protein sequence | MRGGVHIVTR GTNIDSVEMA AKRQSEFTRG LSRQARRRTH ALMFGALGAC VPAAAHAQAV
ADAGAQFNGQ RDDGANAVES EQATVASEHL VNPGADGPSA ALGYAFNTFR TSGQGAADTQ
NYLGFTAGAN IGNWQVRERG ALQSMTGRGT SYQNIAAYLQ RDIPSLKSQL VLGDQFTDGA
VFDSIGLRGV RVESIDSAGS AAVAGYAPVV RGVAMSNALV TVTQNGNLLY EATVAPGPFE
INDVAATGYG GNLLVTVTEA DGSRHSFTVP YTSVVPLLRQ ASTRFSVAGG VIRDPRIKRH
RALVQGTLQH GFNGMVTGYG GAVAADGYLS GLLGVAVGTP IGALSADISA AQADVPQARS
TRGTSLRIGY SKFIEQTDTN VSIAAYGYSS GGFLSLRDAM LGRDAAPADS GANGAGRRRN
QLQISLNQRL GAAGGTLYVV GSTSDYWNRS GSDMQFQIGY SGALRVADAN LNYTVSVSRQ
RTGLTGPMSN QVFATVSVPL GKAEHAPVLS AGLMHDSRAG WSEQATLAGS AGAADELGYG
LYGTHSDRSA TGGGNVQYHG PYANFGGSAS GGSGYSQVSA NIRGSVFARR EGITLAGTPE
DGTDTVQPKH SAGASEYPGA GASSPGYTAV PHLLPGNVDP IEVGPQRALP DSKVQPSSLE
MAPQVNAAVV THHSADDSIA SNVATANQTE GAERLMLFMN AVPMKVYARN SVVSWSDVER
GNGHH
|
|---|
| |