| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0172 |
|---|
| Symbol | |
|---|
| ID | 4009339 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007952 |
|---|
| Strand | + |
|---|
| Start bp | 3175091 |
|---|
| End bp | 3176164 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637952501 |
|---|
| Product | OmpC family outer membrane porin |
|---|
| Protein accession | YP_555121 |
|---|
| Protein GI | 91779913 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 51 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAGCACA TCATTGCAGC CGGCTTGACG GCAATCTGCG CAACGACAGG CGCATGGGCG
CAGAGCAGTG TGACGCTATA CGGCAGCCTG GATGCCGGTG TCGCGTATGT CAGCAATGTA
GGTGGCCATT CGAAGTGGAT GGAAGAACAA GGCAACATGC AGCCTGACCG CTGGGGCCTG
AAAGGCGTGG AAGATCTGGG CGGCGGCCTG AAGACGGTCT TCCAGCTGGA AAACGGCTTC
TATACGAACA CCGGCGCGTT CGCGAAATCC GGTGTGCTGT TCAACCGTCA GGCGTTTGTC
GGTTTGAGCT CGGACACGAT CGGCACGCTG ACGCTCGGTC ATCAGACGCC GTTCAGCTTC
GACGTGCTGG GTCCGCTGAG CACGGCTTAT CTGGCGGCCA GCTGGTACGC GTTCCACCCG
GGCAATATCG ACGAACTCGC CGACACCGGC GTGGTGCCGT TCGACAATTC GGTGAAATTC
CGCTCGGCGA GTTTCAACGG CTTTCAGGTC GGCGCGATGA TGGGTCTCGG CAACACGACC
AACTTCTCCA CGGGCAAGAC GTTGAGCTTT GCGCTTAGCT ACGCGAACGG TCCGTTCAAG
GCCGGCGCGA CGTACGCGAA TGAGCACGAC CGCACGCCGT CGATCGTCAC CACGGGCATC
AACAACTTCC AGGGCGTGGC GGCGGCCAAC TACACCGCGG ACAAGGTCGA AAACATGGGC
GCGGGCGCGT CATACCAGTT CGGCAAGCTG CTGGTGCACG GTCTGTACAC GCGCGTGAAG
CTGGAGTCGG CTGGGCACTC GGACACGTAT CAGAGCTACG ACGTCGGCGC GAATTATCAG
TTCACGCCGT TCAATAGCGT CGCCGGCGGC GCTGCGACGA CGACGTTGGC GGGGCATCGC
TGGACGCAGT TCGAGATCGG CGACATCTAC GCGCTGTCGA AGTCCACGCA GCTCTACGTG
AACGCGCTGT ACGAGCGCGC GGGTTCGAAC ACGGATGCAG CGTTCTTTAC GGCGGGCGTG
TCGAGCGGCC GGAACCAGAC GGTCATCCTG ACCGGCATCC ACCACTCGTT CTGA
|
|---|
| Protein sequence | MKHIIAAGLT AICATTGAWA QSSVTLYGSL DAGVAYVSNV GGHSKWMEEQ GNMQPDRWGL
KGVEDLGGGL KTVFQLENGF YTNTGAFAKS GVLFNRQAFV GLSSDTIGTL TLGHQTPFSF
DVLGPLSTAY LAASWYAFHP GNIDELADTG VVPFDNSVKF RSASFNGFQV GAMMGLGNTT
NFSTGKTLSF ALSYANGPFK AGATYANEHD RTPSIVTTGI NNFQGVAAAN YTADKVENMG
AGASYQFGKL LVHGLYTRVK LESAGHSDTY QSYDVGANYQ FTPFNSVAGG AATTTLAGHR
WTQFEIGDIY ALSKSTQLYV NALYERAGSN TDAAFFTAGV SSGRNQTVIL TGIHHSF
|
|---|
| |