| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A4019 |
|---|
| Symbol | |
|---|
| ID | 4003388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | + |
|---|
| Start bp | 496562 |
|---|
| End bp | 497683 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637945632 |
|---|
| Product | OmpC family outer membrane porin |
|---|
| Protein accession | YP_557032 |
|---|
| Protein GI | 91781826 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00000373158 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACG TAGGCAGGTG GGCCGCGGCC GCAGTGCCCG CGGCGTTGGC GTCGTTGGGG
TGCCAGATGG CGTACGCGCA ATCCAGCGTG ACGCTGTACG GCGTGGTCGA CGAAAGCGTG
CGCTATCTGA CTCACGCGAA CGCGGCCGGC GATTCGTCGA TCGGACTCGG CAACGGCGGC
ATGACGCAGA GCCGCTGGGG ATTGAAGGGC GTCGAGGATC TGGGCGGCGG CTGGTCTACC
TTCTTCAAAC TCGAAAACCG CATCTATATC AATAGCGGCC AAAGCGATCC CACACTGCCG
TTCTTCAACG AAGCGCAGGT CGGCGTGCGC TCCGATTCGT ACGGTCAGAT CATTCTCGGT
CGTCAGTACA ACGTCGTGAT CGAAGGCGTC ACGGTGGCCG GCTACGGCAG CAATTCCTGG
ATCCCATACG ACTTCAGCTT TCAACCTGAA GTGACGATGA CGGGCGGCAT CTGGACCAGC
AACCAGGTGC AATATCAGGC GAGATATAAC GGCTTCACGT TCGCGGCCGG CTACGCATTC
GGCGGCAACG CGGGCAATTC CTACGGCAGT CAGATCGGCG CGGCCGCGGC TTATAAACCG
GAAGGCGGTC CGTTCAGCCT GGGCGGCGCG TACGAGGAGT CGAAGGATTC CGTCAACGGC
GCGGCGGCGA AGACATGGAC CTTCGGCGGC GCGTACACGT GGAATCTGAC GCGCTTTTCC
GCCGGCTACA TCGTCAATCA GAACGACGCG GGCTTTTCGA ATTTCGCCAA CGGGCCGTTC
ACCGCGCCCG TGCTGGCGGC TCTCAAGTAC ACGGACTTTG CGCGGCGCCG CATGATCATG
GGCGGCATCA CGCAACAGGT GAGCAACAAG TGGCACTTTG CAGCGAACGT CTGGCGCACG
CTGCAGGACG GCAAGACGGC GGCGCAGGAC GGCTCGGCCT GGCAGTACCA ACTGGTGGCG
GACTACAACC TGTCCAGACG CACCGACATC TATCTGGAAG GCGATTATTC GATCTATCGT
GGCGATCTGA TCGGTGCGCA ACTGCAGGGC GTCAACGGCG TCGGGCTTGC GCAGAAGGGC
TCGCAGATCG GGTTGATGGC AGGCGTGCGG CATCAGTTCT GA
|
|---|
| Protein sequence | MKNVGRWAAA AVPAALASLG CQMAYAQSSV TLYGVVDESV RYLTHANAAG DSSIGLGNGG
MTQSRWGLKG VEDLGGGWST FFKLENRIYI NSGQSDPTLP FFNEAQVGVR SDSYGQIILG
RQYNVVIEGV TVAGYGSNSW IPYDFSFQPE VTMTGGIWTS NQVQYQARYN GFTFAAGYAF
GGNAGNSYGS QIGAAAAYKP EGGPFSLGGA YEESKDSVNG AAAKTWTFGG AYTWNLTRFS
AGYIVNQNDA GFSNFANGPF TAPVLAALKY TDFARRRMIM GGITQQVSNK WHFAANVWRT
LQDGKTAAQD GSAWQYQLVA DYNLSRRTDI YLEGDYSIYR GDLIGAQLQG VNGVGLAQKG
SQIGLMAGVR HQF
|
|---|
| |