| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A2180 |
|---|
| Symbol | |
|---|
| ID | 4005318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 2509825 |
|---|
| End bp | 2510397 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637947460 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_558841 |
|---|
| Protein GI | 91783635 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.597031 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGAA CTACCGATAT CACCGCAGCG CAGGCGAAAG AGGCGCATCT GCGAGCCCTG
TTCCTGAGCG GACTGGACGG CGACAGCGCC GCGTACCGGC AATTCCTCGC GGAACTGGGC
GCGCACCTGC GCGGCTTCCT GCGAAGGCGG CTTCACGACG GCGCGTCCGA CGCCGAAGAT
CTCATGCAGG AAATATTGCT TGCAGTGCAT AACGCACGGC ATACCTACCG CTCGCAGGAA
CCGCTGACTG CATGGATTCA TGCCATCGCG CGCTACAAGC TGACAGATTA CTTTCGGGCG
CGCGCCCGGC ATGACGCGCT GAACGATCCG CTTGACGATG CGTTCGAATT GCTCGCCGCA
CCCGATCTCG AACCGGCGCA AGCAAAGCGC GATGTGGGAA AACTGCTCGA ACAGTTGCCG
GATCGCCAGC GTCTGCCGAT CGTGCACGTG AAGCTCGAAG GGCTTTCCGT GACGGAGACC
GCGAAATTGA CCGGCTTGTC GGAATCCGCG GTGAAGATTG GCGTGCATCG TGGACTGAAG
GCATTGGCTG CAAGGATTCG AGGAACGCGA TGA
|
|---|
| Protein sequence | MNRTTDITAA QAKEAHLRAL FLSGLDGDSA AYRQFLAELG AHLRGFLRRR LHDGASDAED
LMQEILLAVH NARHTYRSQE PLTAWIHAIA RYKLTDYFRA RARHDALNDP LDDAFELLAA
PDLEPAQAKR DVGKLLEQLP DRQRLPIVHV KLEGLSVTET AKLTGLSESA VKIGVHRGLK
ALAARIRGTR
|
|---|
| |