| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A1471 |
|---|
| Symbol | |
|---|
| ID | 4003104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 3293342 |
|---|
| End bp | 3294457 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637948161 |
|---|
| Product | OmpC family outer membrane porin |
|---|
| Protein accession | YP_559535 |
|---|
| Protein GI | 91784329 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.620688 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0669938 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAATT GGGTTGGCGC AGTCGTCGCA TTTGGCTGGT TGGCTTCAGC AACCGATCTC
GCCCACGCGC AGAGCAGTGT GGCTTTGTAT GGATTGATCG ACGAAGGCTA CACGTACGTT
TCCAACATTG GCGGGCACAG CTCGAACGCT TTGGCTAGCG GGATCGCGCA CGGAGACCGC
TGGGGGCTCA GGGGAACGGA AGACCTGGGC GGCGGTCTTT CCGCGATCTT CGACCTTGAA
GGCGGCTTCA ATCTCAACAC GGGTGCGACA GGCAACGGCG GCGCGATCTT CGGCCGCCAG
GCGTGGGTTG GCCTGCAAAG TCAGAAGTGG GGCGCCGTGA CTGCGGGTGA TCAGTACGAC
ATCATTTCGG ACTACATGTG CGATTACAAC GTCGGCTTCT ACGCGAGCGG ATATGGTATT
CACGAAGGCG ACATCGACCG GATGGAGTGC GACCGCCTGC CTAACGCCGT CAAGTACACA
TCGCCCAGAA TTGGCGGCTT CAAGGGCGGC ATCATGTACT CGTTCAGCAA CGTTCCTGGA
AGCTTCCACA CGGGCAGTGC GTGGGAAGTG GGTGGCAGCT ACATTTTCGG CCCGCTTCAC
CTGGGGGTGG CCTGGGCCTC GCTGCCGGGC AAATCGATCG ATCCGTATGG GCAGCTTGGC
ACGCCGGTAT TCTTCGGGCA GGCAGTCGCC ACGGTCACCA GTACGAAAGC AACCGATCTG
AACACCGCCT TCGTGCTCAA CAAGTACAAC ATCTTCGCAG TCGGCGGAAG TTACAAGTTC
GGCAAGGTGA CGGTGATGGC CAACTTCACG AACACGGAGT TGGGCTACCA CGGCATGACC
TCATACATGC ATGTATTCGA GGGGGGCGCG ATCTACAACC CCACGCCGGC CTGGGGGCTG
ATTGCAAGCG CCCAGCATGA TGCACTTCAG GGTCATGCGT GGAATCAGGT GTCGGCTGGT
GTGCAGTACT ATCTGTCGAA ACGCACCACG GTGTATGTGT CCGGCGACTA TATCAAGGCA
TCTGCCGGGG TCAATCCGGA ACTCGGATGG TTCGTGAACC CGTCGCTCAC CAACAAGCAG
ATGGACGCAC GCCTCGGCAT CACTCACAAG TTCTGA
|
|---|
| Protein sequence | MKNWVGAVVA FGWLASATDL AHAQSSVALY GLIDEGYTYV SNIGGHSSNA LASGIAHGDR
WGLRGTEDLG GGLSAIFDLE GGFNLNTGAT GNGGAIFGRQ AWVGLQSQKW GAVTAGDQYD
IISDYMCDYN VGFYASGYGI HEGDIDRMEC DRLPNAVKYT SPRIGGFKGG IMYSFSNVPG
SFHTGSAWEV GGSYIFGPLH LGVAWASLPG KSIDPYGQLG TPVFFGQAVA TVTSTKATDL
NTAFVLNKYN IFAVGGSYKF GKVTVMANFT NTELGYHGMT SYMHVFEGGA IYNPTPAWGL
IASAQHDALQ GHAWNQVSAG VQYYLSKRTT VYVSGDYIKA SAGVNPELGW FVNPSLTNKQ
MDARLGITHK F
|
|---|
| |