| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4495 |
|---|
| Symbol | |
|---|
| ID | 4012809 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4749826 |
|---|
| End bp | 4750659 |
|---|
| Gene Length | 834 bp |
|---|
| Protein Length | 277 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637944147 |
|---|
| Product | shikimate dehydrogenase |
|---|
| Protein accession | YP_551279 |
|---|
| Protein GI | 91790327 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.39658 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACG GCAACACCGA ACTCATTGCC CACATCGGTT ACCCCACGCA TTCGTTCAAG
GCGCCGATGA TCTACAACCC CTACTTTGAC CACATCGGCG TCAATGCCCG GGTGATGCCC
ATGGGCTGCC AGAGCGCTGA CTACCCGGCC TTTCTGCGCG CGGTGTTCAC GCTGACCAAC
ATTCGGGGCG CCCTGATCAC CATGCCGCAC AAGGTCACCA CGGTGGACCT GCTCGACCGC
GCCACGCCCA CCGTGTCGGT GGCGGGCTCG TGCAACGCCG TGCGGCGCGG CGCCGATGGC
AAGCTCGAAG GCGACATGTT CGATGGCGAA GGCTTTGTGC GCGGTGTGCA GCGCAAGGGC
CTGACGCTGG ACGGTGCCCG GGTGCTGGTG GTCGGCAGCG GTGGCGTGGG ATCGGCGATT
GCCGCATCGC TGGCGGCGGC CGGTATTGGC GCCATCAGCC TGCATGACGT GAACACCGCG
TCCTGCGAAG GCCTGGGCGC GCGGCTGAGA AAGCACTACC CCAGGTTGCA GGTCAGCACC
ATGTCCAATG ACCCGGCCGG CCACGACCTG GTGGTCAATG CCACGCCCAT GGGAATGAAC
GAGGGCGACC CGATGCCCAT GGACATTGCG CGCATCGCGC CGACCACCTT TGTCGGCGAA
GTCGTGATGA AGACAGAGAT GACCGCTTTC CTCAATGCTG CGGAGGCACG CGGCTGCCCC
ATCCAGGTGG GTTCGGACAT GCTGTTCGAG CAGATCCCGG CCTATCTTGA ATTTTTTGGC
TTCCCGACCA CCACGCCCGA GGTGCTGCGT TCCGTGGCGA AACTCAGTTA CTGA
|
|---|
| Protein sequence | MINGNTELIA HIGYPTHSFK APMIYNPYFD HIGVNARVMP MGCQSADYPA FLRAVFTLTN
IRGALITMPH KVTTVDLLDR ATPTVSVAGS CNAVRRGADG KLEGDMFDGE GFVRGVQRKG
LTLDGARVLV VGSGGVGSAI AASLAAAGIG AISLHDVNTA SCEGLGARLR KHYPRLQVST
MSNDPAGHDL VVNATPMGMN EGDPMPMDIA RIAPTTFVGE VVMKTEMTAF LNAAEARGCP
IQVGSDMLFE QIPAYLEFFG FPTTTPEVLR SVAKLSY
|
|---|
| |