| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4388 |
|---|
| Symbol | |
|---|
| ID | 4012920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | - |
|---|
| Start bp | 4630570 |
|---|
| End bp | 4631688 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637944037 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_551174 |
|---|
| Protein GI | 91790222 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.861875 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGA ATCCAAGCTT AGTTCTCATT CTTTCCCTGC TAGGGATGCC ACTAGCGCAT
GCTGTTGAAG TTGTTGTCGG GCAGGTCGGT CCGATGTCAG GCTTGGATGC CAATCAAGGC
AGGGCATATG CGGTTGGTAT GCAGCTGATG TTTAACAATG TCAACAAGGC CGGCGGCATC
AACGGCCACA CGTTCGCCCT GGTTCGCAAA GATGATGGTG GGCGGGCGGA GGATACTATT
AGTGCCACCA AGCAGTTGCT GACTGAAGAA AAGCCATTGG TTTTGGCTGG ATTTTTTGGC
AACCGCAACA TCACAGATTT GGTGAGTTCA GGCGTGCTCG AAGCAAACTC CATCGCCGTC
GTGGGCTACC GCACGACAGA AATGCGTCCC GAGACCCCGT TGCTGTACAA CGTGCGGGCC
AGCTTACGTG ACGAGATCCA CAAAATTACC GAACACCTGG CCACTGTCGG TATCAACCGA
ATTGGCCTTT TTTACGAAGA CGGTCCGGGT GTTGCCTCGC TGCTTGCTGC CACCGACGAA
GCAGTCAAGA AGACTCGCGG CAATGTCATT TCCAAAGCAT CCTATCCAGC TGGGACGGCT
CGCGTTACGC CGGCTGTTGA GGTGTTCGTT AAAACCACAC CGCAGGCCAT TATCATGGTC
GCAAGCGGGG CGGCCGCAGC CGCCTTTATT GAGCAGTACC GGGCGGCTGG TGGTGCATCA
CAGTTGCTTT CGCACTCAGG GGCCGACATC GAGCAGTTAT CAAAGCGACT GAGCGAGGAA
CAATTGCGGG GTGTGGCAAT TGCGCAAGTT GTGCCCAATC CGTACAAGAT CTCAGTGCGC
CTGGCCAAGG AGTTCAGCGA TACGATCGCT AAAACTCAGA GTCTAGAGGT GCCGGTGAGC
TATACCATGA TGGAAGGCTA TATCGCAGCC AAGGTCATCG TGGAAGCCGT GCGTCGACAA
GGAAAAAATC CAAATCGCTC AGGGTTTGTG ACAGCGCTGG ATAGCATGGA TAGCTATGAC
CTCGGCGGCT ACCTGGTGAG CTTCAAGCCG GGAATACGCT CCGGCGCGAA ATTCGTGGAG
CTGTCCATCA TCAGTGGCAG CGGGAAAATA CGTCAGTAG
|
|---|
| Protein sequence | MKMNPSLVLI LSLLGMPLAH AVEVVVGQVG PMSGLDANQG RAYAVGMQLM FNNVNKAGGI
NGHTFALVRK DDGGRAEDTI SATKQLLTEE KPLVLAGFFG NRNITDLVSS GVLEANSIAV
VGYRTTEMRP ETPLLYNVRA SLRDEIHKIT EHLATVGINR IGLFYEDGPG VASLLAATDE
AVKKTRGNVI SKASYPAGTA RVTPAVEVFV KTTPQAIIMV ASGAAAAAFI EQYRAAGGAS
QLLSHSGADI EQLSKRLSEE QLRGVAIAQV VPNPYKISVR LAKEFSDTIA KTQSLEVPVS
YTMMEGYIAA KVIVEAVRRQ GKNPNRSGFV TALDSMDSYD LGGYLVSFKP GIRSGAKFVE
LSIISGSGKI RQ
|
|---|
| |