| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_4000 |
|---|
| Symbol | |
|---|
| ID | 4013328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas sp. JS666 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007948 |
|---|
| Strand | + |
|---|
| Start bp | 4197234 |
|---|
| End bp | 4198229 |
|---|
| Gene Length | 996 bp |
|---|
| Protein Length | 331 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637943649 |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_550792 |
|---|
| Protein GI | 91789840 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.307178 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAACA TATCGGGATC AAGTCCTGCA TACGAGGGGA TTTCTTCGTT TGCAGGCAAA
AAGACGTGGA TAACCGGACA TCGCGGAATG CTTGGATCTG CCCTGGTTCG CAGCTTTGCC
AAAGAGGATG CCAATATATT GCTGACCTCT CGCCAGGAAC TTGACTTGTC CGACCAAAGC
GCCGTCTTCA ATTGGGTCGA CGAAAACCGG CCTGAGTTGA TTTTTCACGT GGGTGCAAAG
GTAGGGGGTA TCCACGCCAA CTCCACGCTT CCTGCCGATT TTCTGTACAG CAATTTGATG
ATTCAATCAA ATGTCATCAA TGCAGCGCAT CTTTTTGGGG CGAAGAAACT GGTGTTCGTG
GCATCAAATT GCACCTACCC AACAAAAACA GCACAGCCTA TACCCGAAGA AGCGCTGATG
ACCGGCCCTC TCGACGAGAA CATTCGCGCT TATGCCATCA GCAAAATCGC GGGCATTGAG
ATGTGCCGAG CCTATCGCAA GCAGTATGGC TCCAACTTTA TCTCCGTAAT TCCTCCCAAT
TTGTATGGTC CTGGTGATAA CTATCACCCA CAGCATAGCC ACGTCGTTGC GGGCATTTTG
CGCCGTACCC ACGAGGCAAA GCTGGCCGGC AAATCAGAGT TTGTTGTTTG GGGTGACGGC
ACTCCGCGAC GTGAATTGTT GCACGTGGAC GACCTGGCTG ATGCCATGAA GACCCTCATG
GCTGCCCCCG TCACTCATGA TCTGTACAAC ATTGGCTGCG GCCATGACTT GTCAATTGCG
GAGCTGGCGA CGCTGATTGC CGAAGTAGTC GACTTCAAGG GAAGCATCGT CTACGACAAA
TCCAAGCCAA ATGGCACGAT GAGAAAATTA TTGGACAGCT CACGTATTCA CTCTTTGGGC
TGGCGTCCAA AAATAGATGA GAAGGCCGGC CTCAAGAGTG CCTACAGGGA CTTCCTGACC
CTTCTCGAAA CACCGGAACT TGCCGGGCGG CTGTAA
|
|---|
| Protein sequence | MINISGSSPA YEGISSFAGK KTWITGHRGM LGSALVRSFA KEDANILLTS RQELDLSDQS
AVFNWVDENR PELIFHVGAK VGGIHANSTL PADFLYSNLM IQSNVINAAH LFGAKKLVFV
ASNCTYPTKT AQPIPEEALM TGPLDENIRA YAISKIAGIE MCRAYRKQYG SNFISVIPPN
LYGPGDNYHP QHSHVVAGIL RRTHEAKLAG KSEFVVWGDG TPRRELLHVD DLADAMKTLM
AAPVTHDLYN IGCGHDLSIA ELATLIAEVV DFKGSIVYDK SKPNGTMRKL LDSSRIHSLG
WRPKIDEKAG LKSAYRDFLT LLETPELAGR L
|
|---|
| |