| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_2717 |
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| Symbol | |
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| ID | 4014637 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | + |
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| Start bp | 2862280 |
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| End bp | 2865885 |
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| Gene Length | 3606 bp |
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| Protein Length | 1201 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637942381 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_549531 |
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| Protein GI | 91788579 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.103447 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATTTAC CTCCACTCGT CAGCGGCAAA CGCTACACCC TGCCGCAGCC CCCCGGTTCC
GCCGATGCCC TGCTACTGGC TCGCCTGGGA CAGCGCGAGC AAGCGGCCGG CAAGCTCACG
GCCATCATCA CGTCGGATGC CACCACCGCG CAGCGCCTGA TGGACGAGAT GGCGTTTTTT
GCGCCCGACC TGCGCTACGC CCTGTTTCCC GACTGGGAGA CCCTGCCCTA TGACACCTTC
TCGCCGCACC AGGACCTGAT CAGCGAGCGG CTCGCCACGC TGTGGCGCAT TTCACAGCGC
GACAAGGACA CCGGTGCCGA CGTGGTGATC GTGCCGGCCA CCACCGCGCT GTACCGCCTG
GCGCCGCCGA GCTTTCTGGC GGGCTACACC TTCGAATTCA AGGTCAAGCA AAAGCTCGAC
GAGAGCCGCC TGAAGGCCCA GCTCACGCTG GCAGGCTACA GCCACGTCAC CCAGGTGGTG
GGCCCGGGTG AATACGCGGT GCGCGGCGGG CTGATCGACC TGTTTCCGAT GGGCTCGCTG
GTGCCCTTTC GCGTTGATCT GTTTGACGAC GAGATTGACA GCATCCGCAC CTTTGACCCG
GACAGCCAGC GCAGCCTCTA CCCGGTGCCC GAGGTACGCC TGCTGCCGGG CCGAGAGTTT
CCGATGGACG ACGATGCACG TGCCAAGTTC CGCAAACGCT GGCGCGAACT GCTGGACGGT
GACCCGACCA AAAGCCGCAT CTACAAGGAC ATGGGCAATG GCGTCGCCAC GTCCGGCATC
GAGTACTACC TGCCGCTGTT TTTTGACGAG ACCGCCACGG TGTTTGACTA CCTCGGCAGC
GATGCCACGG TGGTGTTGCA TGGAGACCTG GAACCGGCCT TCCAGCGCTT CTGGCAGGAC
ACCAAGGACC GCTACCGGCT GGTGCGTGAT GCGCCCGACC GGCCGGCCCT GCCGCCCGAG
TCGCTGTTTC TGGGTGCGGA GCAGTTTTAT GCACGGGCCA ATGGCTATGC GCAGCTGGCG
CTGAAAGCGG GGAGCCCTCA CCCTAACCCT CTCCCAGGGG GAGAGGGGAT CAAAGGGGAT
TTGCTCCCTC TCCAAGGGGG AGAGGAGAGC AAGGGAGATT TGCTCCCTCT CCCCCTGGGA
GAGGGCAGGG GTGAGGGCTC CCCGTACACC GAATTCGACT CACTACCGGC AATGGCCGTT
GTGCGCGGCG CCGAAGACCC GCTGGCCCGC TTCAAGGGGC ATGTGCGCAA CACGGCGCAT
CGCGTACTCG TGCTGGCCGA AAGCGATGGC CGCCGCGAAA GCCTGCTCGA CTTTCTGCGC
GCCAGCAATG TCAGCCCGCC CGCCTTCAAC TCACTGCAAG ACTTCCAGAC CAGCGACGAA
AAACTCGGCA TTGCGACGGC CGCGCTGAAC ACCGGCTTCA GCTGGCTCGA AGAAGGCATC
GACTTCATCA CCGAGACCGA ACTGTTTGCC GCGGGTGTCA CGACTCGCCG GCGCAACAAA
AAGCAGGAAC AGGTCAGCGA TGTCGAAGCC CTGATCAAGG ACCTGTCCGA GCTCAATGTC
GGCGACCCGG TGGTCCACAG CGCCCACGGC ATCGGCCGCT ACAGGGGCCT GCTCAACCTG
GACCTGGGCC AGGACAAAAA CCCGGACGGC TCGCCCTCGC TCCAGGAGTT CCTGCACCTG
GAATATGCCG ACAAGGCCAC GCTGTACGTG CCCGTCAGCC AGTTGCACCT GATCAGCCGC
TACACCGGCG TCAGCGCCGA AGAAGCGCCG CTGCACCGGC TGGGCAGCGG CCAGTGGGAA
AAAGCCAAGC GCAAGGCGGC TGAGCAGATA CGCGACTCCG CCGCCGAGCT GCTGAACATC
TATGCCCGCC GCGCGGCGCG CGAAGGCCAT GCTTTCCGCT ATTCGCCGGG CGACTATGAA
GCCTTTGCCA ACGACTTCGG CTTTGAGGAA ACCGCCGACC AGCGCGCCGC CATCCACGCC
GTGATCCAGG ACATGATCAG CCCGCGCCCC ATGGACCGGC TGGTTTGCGG CGACGTGGGC
TTCGGCAAAA CCGAGGTTGC CCTGCGCGCC GCCTTCATTG CCATCACCGG CGGCAAACAG
GTGGCCCTGT TGGCCCCCAC CACCCTGTTG GCCGAGCAGC ATTACCAGAC GCTGGTGGAC
CGTTTTGCCA AGTGGCCGGT CAAGGTTGCC GAGATGAGCC GCTTCAGGTC AGCCAGGGAA
ATCACCGCAG CCATCAAGGG GCTCGCCGAC GGCAGCGTCG ACATTGTCGT GGGCACCCAC
AAGCTGCTCA GCCAGGACGT GAAGTTCCAG CGACTGGGCC TGCTGATCAT CGACGAGGAG
CACCGCTTTG GTGTGCGCCA CAAGGAGACC ATGAAGGCCA TGCGGGCCGA GGTGGATGTC
CTCACGCTGA CGGCCACACC GATTCCGCGC ACGCTGGGCA TGGCGCTGGA AGGCCTGCGC
GATCTGAGCG TGATCGCCAC GGCGCCGCAG CGCCGGCTGG CCATCAAGAC CTTCGTGCGC
AGCGAAAACA ATGGTGTGAT CCGCGAAGCC GTGCTGCGTG AGCTGAAGCG CGGCGGGCAG
GTTTACTTCC TGCACAACGA GGTGGAAACC ATCCAGAACC GGCGCGAAAA GCTCGAAGAG
ATACTGCCGG AAGCACGCAT TGCCGTAGCC CACGGCCAGA TGCCCGAGCG CGAGCTGGAG
CGCGTGATGA AGGACTTCGT GGCCCAGCGC TACAACCTGC TGCTGTGCTC CACCATCATC
GAAACCGGTA TTGACGTGCC CAGTGCCAAT ACCATCGTGA TGAGCCGCGC CGACAAGTTT
GGTCTGGCGC AGCTGCACCA GCTGCGCGGG CGCGTCGGCC GCAGCCACCA CCAGGCCTAT
GCCTACCTGA TGGTGCCCGA CATCGAAGGC CTGACCAAGC AGGCCAGCCA GCGGCTTGAA
GCGATCCAGC AGATGGAGGA GCTCGGTTCT GGCTTTTACC TGGCCATGCA CGACCTAGAA
ATCCGCGGCA CCGGCGAGGT ACTCGGTGAA AGCCAGAGCG GCAACATGCT GGAGGTGGGC
TTTCAGCTGT ACAACGAGAT GCTCAGCGAA GCCGTGGCGT CCCTCAAGGC CGGCCGCGAG
CCGGACCTGC TGTCGCCCCT GAGCGTGACC ACCGAGATCA ACCTGCATGC CCCGGCGCTG
TTGCCCAACG ACTACTGCGG CGATGTGCAC CTGCGCCTGA GCTTTTACAA AAAACTGGCC
ACCGCCAAAA ACACCGACCA GATCGACGCG CTGCTGGAAG AAATCGTGGA CCGCTTCGGC
AAGCTGCCGC CGCAGGCACA GACTCTGATC GACGTGCACC GGCTGCGCGT GATCGCCAGG
CCGTATGGCG TGGTCAAGGT GGATGCAGCA CCGGGCCTGA TCAACATCAC CTTCAAGAAG
GACCCGCCGA TCGACTCGAT GGCCATCATG CAGCTGATCC AGAAAAACCG GCACATCAAG
CTGGCCGGCA ACGACAAGCT GCGCATTGAG CGTGCGCTTG AAAACCCCAA GGACCGCGCG
CAGATGGTGC GCGATGTGCT CAGGAGTTTG GGGCAGCCCA AACCCGTGAC ATATGCCGAG
GCATAG
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| Protein sequence | MHLPPLVSGK RYTLPQPPGS ADALLLARLG QREQAAGKLT AIITSDATTA QRLMDEMAFF
APDLRYALFP DWETLPYDTF SPHQDLISER LATLWRISQR DKDTGADVVI VPATTALYRL
APPSFLAGYT FEFKVKQKLD ESRLKAQLTL AGYSHVTQVV GPGEYAVRGG LIDLFPMGSL
VPFRVDLFDD EIDSIRTFDP DSQRSLYPVP EVRLLPGREF PMDDDARAKF RKRWRELLDG
DPTKSRIYKD MGNGVATSGI EYYLPLFFDE TATVFDYLGS DATVVLHGDL EPAFQRFWQD
TKDRYRLVRD APDRPALPPE SLFLGAEQFY ARANGYAQLA LKAGSPHPNP LPGGEGIKGD
LLPLQGGEES KGDLLPLPLG EGRGEGSPYT EFDSLPAMAV VRGAEDPLAR FKGHVRNTAH
RVLVLAESDG RRESLLDFLR ASNVSPPAFN SLQDFQTSDE KLGIATAALN TGFSWLEEGI
DFITETELFA AGVTTRRRNK KQEQVSDVEA LIKDLSELNV GDPVVHSAHG IGRYRGLLNL
DLGQDKNPDG SPSLQEFLHL EYADKATLYV PVSQLHLISR YTGVSAEEAP LHRLGSGQWE
KAKRKAAEQI RDSAAELLNI YARRAAREGH AFRYSPGDYE AFANDFGFEE TADQRAAIHA
VIQDMISPRP MDRLVCGDVG FGKTEVALRA AFIAITGGKQ VALLAPTTLL AEQHYQTLVD
RFAKWPVKVA EMSRFRSARE ITAAIKGLAD GSVDIVVGTH KLLSQDVKFQ RLGLLIIDEE
HRFGVRHKET MKAMRAEVDV LTLTATPIPR TLGMALEGLR DLSVIATAPQ RRLAIKTFVR
SENNGVIREA VLRELKRGGQ VYFLHNEVET IQNRREKLEE ILPEARIAVA HGQMPERELE
RVMKDFVAQR YNLLLCSTII ETGIDVPSAN TIVMSRADKF GLAQLHQLRG RVGRSHHQAY
AYLMVPDIEG LTKQASQRLE AIQQMEELGS GFYLAMHDLE IRGTGEVLGE SQSGNMLEVG
FQLYNEMLSE AVASLKAGRE PDLLSPLSVT TEINLHAPAL LPNDYCGDVH LRLSFYKKLA
TAKNTDQIDA LLEEIVDRFG KLPPQAQTLI DVHRLRVIAR PYGVVKVDAA PGLINITFKK
DPPIDSMAIM QLIQKNRHIK LAGNDKLRIE RALENPKDRA QMVRDVLRSL GQPKPVTYAE
A
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