| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_1061 |
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| Symbol | |
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| ID | 4012048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007948 |
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| Strand | - |
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| Start bp | 1088476 |
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| End bp | 1090374 |
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| Gene Length | 1899 bp |
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| Protein Length | 632 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637940738 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_547911 |
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| Protein GI | 91786959 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.656983 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAATTT CCAGAAAAGT TTGCGACAAT CGCCGGTTAA TGATTTTTGA TTACTTTCCA
GAGCAGTTAA GGCAGTTGAG GAATTGCAAG CCATTCGCCG GCTTTGCAAA TCGCCTGTTC
GCCCCGGCTA TCCGGGCCCG CCTTGCGGCG CTGGCCTTGA GCCTGCTGGC GGGATCGCTA
CTGGCGTTGA CCACCCTGGA GGCGCACCCG CGCACAGTAC TCGACCTGGA CACCCAAACC
CAGCCGGTTC CGCTGGCGGA CTGGGGTGAC TACTGGATTG ACAGCAGCGG CAGGTTCACG
CCGGAACAGG TCTCCACTAC ACACGATATC CCATGGAAGC CGACGAGCGG CGAGTCCATT
TACCCGGTCA CCAGCGACTA TCCCCTGTGG ATCCGCTTCA ATGTGCCTCC CGCACCGGAC
GCCGAGCGCT GGTACCTCGA AGTACCCTAC CCGTCCGTCA ACCGCGCCTC CCTGTACACC
ATGGACAGCG CCGGCAAGTG GAATGAACAG AGGGCGGGCG ATCTGGTGGC CGTCAACAAA
TGGCCGGTAC CGCACCGCCA TCCGCTACTG CCCATCGCCC TGTCCGCTGA AGTGCCCACC
AACTACCTGT TGCGCCTGGA AAACGGACAC GCCCTGAGCG CCCCCCTGCG GTTCATCAGC
GAAGGACGCC TGAGCTACTC CGAGCAGCGC ATCTCGCTGA TCCTGGGCAT CTTCTTCGGG
CTGACGGGCC TGGCCGCGCT GGTGTCGCTG CTGAGCGCCA TCTCGCTGAG GGACAGTGCC
TACGGCCTGT ACGCCCTGTG CGTCGCGCTG ATGGGCCTCA CGCAAGCGAC CCTGACGGGC
ATAGGCGGCC TGCACCTCTG GCCCCATTGG CCCTGGTGGA ACGATGTGTC CACCTCGGTC
CTGCCCATGC TGACGGCCTC GGCCACGCTG CTCTTCATCT CGGCTACCGT GGCGCTGCCC
GAGCGCCTGC CCCGACTGCA CTGGCTGATG GTCGGCCAGG CGGCGCTGGG CGTGGCGGTC
GCCGCAGTGC TGGCCGTGAT GCCAGTCGCA TCGCGCATGG ACCTCTTTAT TCCTGCCTTG
CTGCTGCTGG AGTTCAGCGG CATGGTGGTC ATGGCATGGG CCTGGCGGCG CGGTGACCGG
TTTGCGCCCT GGCTGATGCT GGCCTACCTG CCCGTGACGG TAGCAGCCGG CTGGACAGTA
GCGCGCAATG CCGACCTGGT GCCGATCGGC TTCCTCACAC AGCACGGCAT GCAGCTGGGC
GTGGCCCTGC ACCTGCCCAT CGTCATGGTG CTGCTGATGC TGCGCAGCCA GCACCGGCGC
GAAAACACCC GCCGCATCCA GGGCCTGGAC CGGGTCGACC CCGCCACCGG CCTGATCAAC
AACCATGTGT TCGGCGAACG GCTGATCCGC ATGATCGCGC GCTCCGAGCG GCTGCAGCAC
CAAAGCGCCG TGATGCTGAT TGACGTGATC AACAGCGCGC AAATTCAGGA AGATTTCGGA
CGCACGGCGG CCGTTGAGCT GCCACTGCGC GTTGCCGAGC GGCTGCTGTC TGCCGCCCGT
GAAATCGATA GCGCGGCGCG GCTGTCGGAG CAGCGCTTCG GCATGCTGGT GGAAGGCCCC
ATCAGCCCGG AAGACGCCGC CATTCTCGCC CAGCGCATCG TCGCGCGTTG CCTCATGCCC
TACAAGGGCC TGCATGTGAA CTGTGTGGCC CAGGTTCACG TGGCTTACGC CATTGTGCCT
TCCCAGGGCT CGTACGCGCA GGGCCTGCTG ACCCAGTTGC AGGAGCGGCT GGCCACGGTG
CCCGCGCAAG GCAAGCGTGC GGTGTTCCTG CTGGGTGAAA CGCCTCCCGC GGCGCCTGTG
CGGCAAGCCT ACAGCCGCAA AGTCGCCAAA GTCGCCTGA
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| Protein sequence | MPISRKVCDN RRLMIFDYFP EQLRQLRNCK PFAGFANRLF APAIRARLAA LALSLLAGSL
LALTTLEAHP RTVLDLDTQT QPVPLADWGD YWIDSSGRFT PEQVSTTHDI PWKPTSGESI
YPVTSDYPLW IRFNVPPAPD AERWYLEVPY PSVNRASLYT MDSAGKWNEQ RAGDLVAVNK
WPVPHRHPLL PIALSAEVPT NYLLRLENGH ALSAPLRFIS EGRLSYSEQR ISLILGIFFG
LTGLAALVSL LSAISLRDSA YGLYALCVAL MGLTQATLTG IGGLHLWPHW PWWNDVSTSV
LPMLTASATL LFISATVALP ERLPRLHWLM VGQAALGVAV AAVLAVMPVA SRMDLFIPAL
LLLEFSGMVV MAWAWRRGDR FAPWLMLAYL PVTVAAGWTV ARNADLVPIG FLTQHGMQLG
VALHLPIVMV LLMLRSQHRR ENTRRIQGLD RVDPATGLIN NHVFGERLIR MIARSERLQH
QSAVMLIDVI NSAQIQEDFG RTAAVELPLR VAERLLSAAR EIDSAARLSE QRFGMLVEGP
ISPEDAAILA QRIVARCLMP YKGLHVNCVA QVHVAYAIVP SQGSYAQGLL TQLQERLATV
PAQGKRAVFL LGETPPAAPV RQAYSRKVAK VA
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