| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mfla_1468 |
|---|
| Symbol | |
|---|
| ID | 4000440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacillus flagellatus KT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007947 |
|---|
| Strand | + |
|---|
| Start bp | 1576166 |
|---|
| End bp | 1577041 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637938379 |
|---|
| Product | squalene/phytoene synthase |
|---|
| Protein accession | YP_545577 |
|---|
| Protein GI | 91775821 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0963018 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATACT TTATGCTGCT TATGACCACA CCCATTCAAG CCACTATCCA GCAGAGCATG
GCGCTTGCCA AAGCCCATTA TGAAAATTTT CCTGTTGCTT CTGTGCTCCT CCCCAAGGAT
TTGCGTGCAC CCGTTGGCTT GGTCTATGCC TTTGCCCGCC AGGCTGACGA CTTTGCCGAC
GAAGGCGAAC TGTCACCGGA AGAACGGCTG GCGTTGCTAG ATGGGTTTCG CTCACAGCTA
GACCAAATCA AGCATGGAGC AACGCCTGAC ACGCCTTTGT TCCAGGCATT GCAGGCCATG
ATCCAAGAGC GCGATCTACC ACTGGAACCA TTTTACGATT TGCTTTCCGC ATTCAGCCAG
GATGTCGTCA AGGCTCGCTA CGCCAATTTC GGTGAGGTGA TTGATTATTG CCGTCGCTCA
GCCAACCCGG TCGGCCGGTT GATGCTGCAT CTATATAAGC AAGCAACGCC CCGCAACGTG
GCTTTGTCGG ATGCAATCTG CACTTCGCTC CAGCTGATCA ACTTCCTGCA GGATGTCGAT
GTCGACTATC GCAAGAACCG CATTTACCTG CCACTAGATG AGCTGCAGAA ATACAACATT
ACAGAGCAGC AGATTGCCGG TCAGCATAGC GGAGGCACTT GGAGTCTATT CATGGAATTC
CAGGTAAACC GCACGCGCAA ACTGCTGCAA TCCGGGGCAC CGCTTGGCCT TGCCCTGCCA
GGCCGTATTG GGCTGGAAAT GCGGATGATC ATTGCCGGCG GTGAGCGCAT CCTGAAAAAG
CTTCATCATG TTCGGGGCGA TGTGTTCAAC CAACGCCCAA CCCTCAAGCC AACGGACTGG
GCCTACATGC TGTACCGCGC AGTAAGAAAA AAATGA
|
|---|
| Protein sequence | MAYFMLLMTT PIQATIQQSM ALAKAHYENF PVASVLLPKD LRAPVGLVYA FARQADDFAD
EGELSPEERL ALLDGFRSQL DQIKHGATPD TPLFQALQAM IQERDLPLEP FYDLLSAFSQ
DVVKARYANF GEVIDYCRRS ANPVGRLMLH LYKQATPRNV ALSDAICTSL QLINFLQDVD
VDYRKNRIYL PLDELQKYNI TEQQIAGQHS GGTWSLFMEF QVNRTRKLLQ SGAPLGLALP
GRIGLEMRMI IAGGERILKK LHHVRGDVFN QRPTLKPTDW AYMLYRAVRK K
|
|---|
| |