| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4857 |
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| Symbol | |
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| ID | 3973600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 5419471 |
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| End bp | 5422536 |
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| Gene Length | 3066 bp |
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| Protein Length | 1021 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637927969 |
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| Product | DNA polymerase I |
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| Protein accession | YP_534698 |
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| Protein GI | 90426328 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI)
[COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
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| TIGRFAM ID | [TIGR00593] DNA polymerase I |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.450809 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGAAAA CCTCTGAACA CGCCGCGTCC TCCGTCGCCG TCAAAGCCCC GAGCAAGGGC
GACCACGTCT TTCTGGTCGA CGGTTCGTCG TATATTTTCC GCGCCTACCA CGCGCTGCCG
CCGCTCAACC GCAAGTCCGA CGGGCTGCAG GTCAACGCCG TGCTGGGTTT CTGCAACATG
CTGTGGAAGC TGCTGCGCGA AATGCCGAAC GACGAGCGGC CGACCCATCT GGCCATCATC
TTCGACAAGG CGGAAAAGAC CTTCCGCAAC GAACTCTATC CTCTCTACAA GGCGCAGCGG
CCGCCGGCGC CGGACGATCT GATCCCGCAA TTCGCGCTGA TCCGCGAGGC GGTGAGGGCG
TTCGATCTGC CCTGCCTGGA ACAGATCGGC TTCGAGGCCG ACGATCTGAT CGCGACCTAT
GTGCGGCAGG CCTGCGAACG CGGCGCCACC GCCACCATCG TCTCCTCCGA CAAGGACCTG
ATGCAGCTCG TTACCGACTG CGTCACCATG TTCGACACCA TGAAGGACCG CCGCATCGGC
ATCCCGCAAG TGATCGAGAA GTTCGGCGTG CCGCCCGACA AGGTGGTCGA GGTGCAGGCG
CTGGCCGGCG ACAGCGTCGA CAACGTTCCG GGGGTGCCGG GCATCGGCGT CAAGACCGCG
GCGCAATTGA TCAACGAGTA TGGCGATCTC GACACGCTGC TCGCCCGCGC CGCCGAGATC
AAGCAGCCGA AGCGCCGCGA GGCGCTGATC GCCAACGCCG AGAAGGCGCG GATCTCGCGG
CAGCTGGTGT TGCTCGATGA CAAGGTCGCG CTCGACGTGC CGCTCGACGA ACTCGCGGTG
CACGAGCCGG ATGCGCGAAA ACTGATCGCG TTTCTGAAGG CGATGGAATT CTCCACGCTG
ACGCGGCGGG TCGCGGAGTA TTCGCAGATC GATCCGGCCG ACGTCGAGGC CGATGCTGCG
GTGAAGAGCG GGACGTCTTC TCCCTCCCCC CTTGCGGGGG AGGGTCGGGG TGGGGGGGCC
ACGGACGCCG GCGATCTTTT TGGGGCACCC CCCTCCCCAA CCCTCCCCCG CAAGGGGGGA
GGGAGCGCGC CGCAAACGGG GCAAGGCCTT GCCTCATCGG CGCCGCAATC GAGCGATGCC
CTCACCCCGC AACTCCTCGC CGCCGCGCGG GCCGAAGAGG CGCGGAAGAT TCCGGTCAAC
CGCGACGGCT ACGCCACGCT GCGCACGCGC GACGAACTGC ACGGCTGGAT CGCGAAAATC
CACGACCTCG GCCATGTCGC GCTGGAGGCC AAGGCCACCT TCGACATCAA GAGCGCGGTG
GTCGATCCGA TGCAGGCGGA GTTGACCGGG CTGGCGCTGG CGCTGGGCCC CAATGAGGCC
TGCTACGTTC CGCTCGGCCA TCGGCAATCC GGCGACGCCG CGGGACTGTT CGCTTCCGGG
CTCGAACCCG ATCAGATCGC CGCCCGCGAC GCGCTGGAAG CGCTGCGGCC GATCCTGGAA
TCCCCCGGCG TGCTGAAGAT CGGCTTCAAC ATCAAATTCA CCGCGGTGCT GCTGGCGCAG
CACGGCATCA CGCTGCAGAA CGCCGACGAC GTGCAGCTGA TGTCCTATGC GTTGGACGCC
GGCCGCCACG CCCACGGGCT CGACGCCCTC GCCGAGACCT GGCTCGGCCA CAAGACGCTG
AGCTATGGCG AGGTGATCGG CAGCGGCAAG GCCAAGCTGT CGTTCGACCA GGTCGCGATC
GACCGCGCCA CCTGCTACGC CGCCGAGGAT GCCGACGTCG CGCTGCGGCT GTGGCGGGTG
TTGAAGCCGC GGCTGGTCGC CGAACGCATG ACCACGGTTT ACGAGACACT GGAGCGGCCG
CTGATCGGCG TGCTGGCGCG GATGGAGCGG CGCGGCATCT CGATCGACCG CGCAGTGCTG
GCGCGGCTGT CCGGCGATTT CGCCCAGACC GCGGCGCGCA TCGAGGCGGA GATCCGCGAG
ATCGCCGGCG AAGAGATCAA TATCGGCAGC CCGAAGCAGC TCGGCGACAT TTTGTTCGGC
AAGATGCAGC TGCCCGGCGG CTCCAAGACC AAGACCGGGG CGTGGTCGAC CTCGGCGCAG
GTCCTGGAAG AGCTCGCCGA GCAGGGCCAC GAATTCCCGC GAAAAATCCT GGATTGGCGG
CAGGTGTCGA AGCTGCGCTC GACCTATACG GACGCGCTGC CGACCTACGT GCATCCGCAG
ACCCACCGGG TGCACACCAC CTACGCGCTG GCCGCGACCA CCACCGGACG GCTGTCGTCG
AACGAACCCA ACCTGCAGAA CATCCCGGTG CGCACCGAGG ACGGCCGCAA GATCCGCCGC
GCCTTCATCG CCGCCCCCGG CCACAAGCTG GTGTCGGCGG ATTATTCCCA GATCGAGCTG
CGGCTGCTCG CCGAAATCGC CGACATCCCG GTGTTGAAAC AGGCGTTCCA GGACGGTCTC
GACATCCACG CCATGACCGC CTCGGAAATG TTCGGGGTGC CGATCAAGGA CATGCCGAGC
GAGGTGCGGC GCCGCGCCAA AGCGATCAAT TTCGGCATCA TCTACGGCAT CTCGGCGTTT
GGGCTGGCCA ACCAGCTCGG CATTCCGCGC GAGGAGGCCG GCGCCTATAT CAAGAAGTAC
TTCGAGCGCT TTCCCGGCAT CCGCGCCTAT ATGGACGCCA CCCGCGACTT CTGCCGCGCC
CATGGCTTTG TCGAAACGCT GTTCGGCCGA AAATGCCATT ACCCCGACAT CAAGGCCTCG
AACGCCTCGG TGCGCGCCTT CAACGAGCGC GCCGCGATCA ACGCCAGGCT GCAGGGCACC
GCCGCCGACA TCATCCGCCG CGCCATGGTG CGGATGGAAG ACGCGCTGGC CGAAAAGAAA
TTATCGGCGC AGATGTTGTT GCAGGTGCAC GACGAATTGA TCTTCGAGGT GGCCGACGAC
GAGGTCGCGG CAACGCTGCC GGTGGTGCAG CAGGTGATGC AGGACGCCCC GTTCCCGGCG
GTGCTGCTGT CGGTGCCGCT GCAGGTCGAC GCGCGCGCGG CGAACAACTG GGACGAGGCG
CATTGA
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| Protein sequence | MPKTSEHAAS SVAVKAPSKG DHVFLVDGSS YIFRAYHALP PLNRKSDGLQ VNAVLGFCNM
LWKLLREMPN DERPTHLAII FDKAEKTFRN ELYPLYKAQR PPAPDDLIPQ FALIREAVRA
FDLPCLEQIG FEADDLIATY VRQACERGAT ATIVSSDKDL MQLVTDCVTM FDTMKDRRIG
IPQVIEKFGV PPDKVVEVQA LAGDSVDNVP GVPGIGVKTA AQLINEYGDL DTLLARAAEI
KQPKRREALI ANAEKARISR QLVLLDDKVA LDVPLDELAV HEPDARKLIA FLKAMEFSTL
TRRVAEYSQI DPADVEADAA VKSGTSSPSP LAGEGRGGGA TDAGDLFGAP PSPTLPRKGG
GSAPQTGQGL ASSAPQSSDA LTPQLLAAAR AEEARKIPVN RDGYATLRTR DELHGWIAKI
HDLGHVALEA KATFDIKSAV VDPMQAELTG LALALGPNEA CYVPLGHRQS GDAAGLFASG
LEPDQIAARD ALEALRPILE SPGVLKIGFN IKFTAVLLAQ HGITLQNADD VQLMSYALDA
GRHAHGLDAL AETWLGHKTL SYGEVIGSGK AKLSFDQVAI DRATCYAAED ADVALRLWRV
LKPRLVAERM TTVYETLERP LIGVLARMER RGISIDRAVL ARLSGDFAQT AARIEAEIRE
IAGEEINIGS PKQLGDILFG KMQLPGGSKT KTGAWSTSAQ VLEELAEQGH EFPRKILDWR
QVSKLRSTYT DALPTYVHPQ THRVHTTYAL AATTTGRLSS NEPNLQNIPV RTEDGRKIRR
AFIAAPGHKL VSADYSQIEL RLLAEIADIP VLKQAFQDGL DIHAMTASEM FGVPIKDMPS
EVRRRAKAIN FGIIYGISAF GLANQLGIPR EEAGAYIKKY FERFPGIRAY MDATRDFCRA
HGFVETLFGR KCHYPDIKAS NASVRAFNER AAINARLQGT AADIIRRAMV RMEDALAEKK
LSAQMLLQVH DELIFEVADD EVAATLPVVQ QVMQDAPFPA VLLSVPLQVD ARAANNWDEA
H
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