| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4739 |
|---|
| Symbol | |
|---|
| ID | 3972715 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 5303915 |
|---|
| End bp | 5304655 |
|---|
| Gene Length | 741 bp |
|---|
| Protein Length | 246 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637927851 |
|---|
| Product | AzlC-like |
|---|
| Protein accession | YP_534580 |
|---|
| Protein GI | 90426210 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1296] Predicted branched-chain amino acid permease (azaleucine resistance) |
|---|
| TIGRFAM ID | [TIGR00346] 4-azaleucine resistance probable transporter AzlC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.750725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCCC ATATTCCAAA AGCCCCAGCC TATTGGGCGC GCGACGGCAT TTTGCCCGGC
GTGATCGCGA TCGGGCCGCT GCTGCCCGGG ACGCTGGCCT TCGGCATGGC GTTCGGCGCC
TTGTGCGCGC AGAAGCATTT CACCTTGGCC GAGGTCGAGG TGATGATGAT CAGCGTCTAT
GGCGGGCTGT CGCAATTCGT CGCGGTGCAG GCCTGGCCGG ACCGGCTGAC GCCGTCGTCG
ATCGCCGCCT TGGCGCTGCT CACCACCACA GTCAACATCC GCTTCGTGCT GATGACGGCC
ACGATGCAGC CGTGGTTCGG CAATCTGCCG CCGTGGCAGG CTTATTCCTC GATGCTGCTG
GTCACCGATG GCGGCTGGCT CGCCGCGATG CGCTACCGCG AGCACGGCGG CGCCAATGCC
TGGTTCTATG TCGGCGGCGG CCTGGTGCTG TACGCGCTGT GGGTGGTGGC GGCGATCCCG
GGATTCCTGC TCGCCGAACA GCTTGCCGAT CCGAAGAAAT ACGGCGTCGA CCTGGTGATG
CCGGCGTTCT TCGCCGCCAT GCTGGTACCG GCCTGGAAGG GGCCGCGGAA GGCGCTGCCT
TGGGCGGTCT CCGGCGCCGT CGCGGTGGCG GTGCACGCGC TGGTACCCGG CTGGTGGTTC
ATCATCGCCG GCGCATTGTC GGGCGCGATC AGCGCCGGGC TGATGGACGA TCCGCCGCCG
CGCCACGGAC ATCCGGCATG A
|
|---|
| Protein sequence | MTSHIPKAPA YWARDGILPG VIAIGPLLPG TLAFGMAFGA LCAQKHFTLA EVEVMMISVY
GGLSQFVAVQ AWPDRLTPSS IAALALLTTT VNIRFVLMTA TMQPWFGNLP PWQAYSSMLL
VTDGGWLAAM RYREHGGANA WFYVGGGLVL YALWVVAAIP GFLLAEQLAD PKKYGVDLVM
PAFFAAMLVP AWKGPRKALP WAVSGAVAVA VHALVPGWWF IIAGALSGAI SAGLMDDPPP
RHGHPA
|
|---|
| |