| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4685 |
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| Symbol | |
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| ID | 3972391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 5244374 |
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| End bp | 5245312 |
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| Gene Length | 939 bp |
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| Protein Length | 312 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637927797 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_534526 |
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| Protein GI | 90426156 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.543199 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCGTT CAGACCCGAA CCAGGCTTGG CGCACGGTTC ACGCAGAAGC CCGCGCGGCG
CGGCGGCGGC GTCATGCGGG CCTGATCGCC ATCGTCACCG CGACGTTGGC TCTGATCGCA
CCGCCCGGTC TCGCGGCCGA GGCGCCGGAC TTCAAAGGCG CCACCGTCAC GGTGGTCAAT
GCCGGCAAGG CCTGCTTTTT CGCGATTGTC GAGGTGTTCG GGCTGCTGCT GCCGCGCGAG
GAAGTCTCGG TGCGGCCGGA TCGCCCGGGT TTGAAGGTCG CCGAGATCTC GGTCGATCCC
GGCGAGACAG TGACCGCCGG GCAGCCGCTG GCCAGACTCA ACCTCCCCGA GGGCGGCACC
ACGCTGGTGC AGGCGCCGAT CGCCGGGGTG GTGAGCGCTT CGTCGGCGGT GATCGGCGCG
GTGGCCTCAG CCAAGGGCGA GCCGCTGTTC AGCATCATCG CCCGCAACAA GTTCGATCTG
GTCGGCCAAG TGCCGGTGCG CGATCTGTCG AAGCTCGCCA TCAATCAGAC CGCCACGATC
AAGATCGTCG GCGCCGACGA ATTGACCGGC AAGGTCCGAC GGGTGTCGGC GACGGTCGAT
CCCCCTAGCC AGCTCGGCCA AGTGTACATC ACCGTCAACG CCAGCAAGCG ACTGCTGGCG
AATTCGTCCG GACGGGCGAT GATCACGACC GGCGAAAGCT GCGGCGTCTC GGTGCCGCTG
ACCGCGGTGC TGTATGGCAG CGCCGGCACC GTGGTTCAGG TGGTGCGGCG GCAGCTGGTC
GAAACCCGGC GGGTGGAGAC CGGGCTAATG TCCGGCGGAC AGATCGAGAT TCGCGAAGGG
CTTGCCGAGG GCGACGTCGT GGTGGCGCGG GCCGGCGCGC TGCTGCGCGA AGGCGATCCG
GTCAGGCCGG TGACCGCAAC GGACGCGAAG GCGAAATAG
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| Protein sequence | MTRSDPNQAW RTVHAEARAA RRRRHAGLIA IVTATLALIA PPGLAAEAPD FKGATVTVVN
AGKACFFAIV EVFGLLLPRE EVSVRPDRPG LKVAEISVDP GETVTAGQPL ARLNLPEGGT
TLVQAPIAGV VSASSAVIGA VASAKGEPLF SIIARNKFDL VGQVPVRDLS KLAINQTATI
KIVGADELTG KVRRVSATVD PPSQLGQVYI TVNASKRLLA NSSGRAMITT GESCGVSVPL
TAVLYGSAGT VVQVVRRQLV ETRRVETGLM SGGQIEIREG LAEGDVVVAR AGALLREGDP
VRPVTATDAK AK
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