| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4630 |
|---|
| Symbol | |
|---|
| ID | 3972140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 5173752 |
|---|
| End bp | 5174825 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637927741 |
|---|
| Product | tartrate dehydrogenase |
|---|
| Protein accession | YP_534471 |
|---|
| Protein GI | 90426101 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR02089] tartrate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGAAT ATTCAATCGC GGCGATCCCG GCAGACGGGA TCGGCCCCGA AGTGATTGCC
GCCGGCACCA CGGTGATGGC CGCCCTGCAG AAGCGGCTCG GCGACGTCAA ATTCAACGTC
GAGACCTTCG ACTGGGGCTC GGACTATTAT CGCAAGCACG GCGTGATGAT GCCGGCCGAC
GGACTTGAGA CTTTGAAGAA ATTCGACGCG ATCTATTTCG GCGCGGTCGG CGACCCGGTG
GTGCCCGACC ACATCACGCT GTGGGGGCTG CGGCTGCCGA TCTGCCAGGG CTTCGATCAA
TACGCCAATG TGCGGCCGAC CAAGATCCTG CCCGGCATCA CCTCGCCGCT GCGCAATGTC
GGGATCGGCG ATCTCGACTG GGTGATCGTG CGCGAGAACT CCGAAGGTGA ATATGCCGGC
TGCGGCGGCC GCGTGCATCG CGGGTTGCCC GAGGAAGTCG GCACCGAGCT CGCGGTGTTT
ACGAGGGTCG GCGTCGAGCG TATCATGCGC TACGCCTTCA AGCTGGCGCA GTCGCGGCCG
CGCAAGTTCT TGACCGTGGT CACCAAGTCG AACGCGCAGC GCCACGGCAT GGTGATGTGG
GATGAGATCG CCGCGGAAGT CTCCAAGGAT TTTCCCGATG TCAGTTGGGA CAAGATGCTG
GTCGATGCGA TGACGGTGCG GATGACGTTG AAGCCGCAAA GCCTCGACAC CATCGTCGCC
ACCAATCTGC ACGCCGACAT TCTGTCGGAT CTGGCCGGCG CCTTGGCCGG CAGCCTCGGC
GTGGCGCCGA CCGCGAACAT CAATCCGGAG CGGCGCTTCC CGTCGATGTT CGAGCCGATC
CACGGTTCGG CCTTCGACAT CACCGGCAAG GGCATCGCCA ACCCGGTCGC CAGCTTCTGG
ACCGCGGCGC AGATGCTCGA TCATCTCGGC GAGGCCGATG CTTCGGCGCG GCTGATGCGC
GCGGTGGAAC AAGTCACCGG CGCCGGCATC GTCACGCCCG ACGTCGGCGG CACCGCGACG
ACGCAGCAGG TCACCGACGC CGTGGTGGAG GCGATCCATA GCTCGAATGT CTGA
|
|---|
| Protein sequence | MREYSIAAIP ADGIGPEVIA AGTTVMAALQ KRLGDVKFNV ETFDWGSDYY RKHGVMMPAD
GLETLKKFDA IYFGAVGDPV VPDHITLWGL RLPICQGFDQ YANVRPTKIL PGITSPLRNV
GIGDLDWVIV RENSEGEYAG CGGRVHRGLP EEVGTELAVF TRVGVERIMR YAFKLAQSRP
RKFLTVVTKS NAQRHGMVMW DEIAAEVSKD FPDVSWDKML VDAMTVRMTL KPQSLDTIVA
TNLHADILSD LAGALAGSLG VAPTANINPE RRFPSMFEPI HGSAFDITGK GIANPVASFW
TAAQMLDHLG EADASARLMR AVEQVTGAGI VTPDVGGTAT TQQVTDAVVE AIHSSNV
|
|---|
| |