| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4511 |
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| Symbol | |
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| ID | 3972289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 5028159 |
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| End bp | 5029508 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637927622 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_534353 |
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| Protein GI | 90425983 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.713937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0817386 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTCG CGGCAGGCAT TCAGAGTTTC AGGCTCGCCT TCGAACGCGA CAAGCGTCTG
ATGGATGCAA TCACCCTGCC GCCGATGGGC AGGGAGAGCG CGGCGTTTCG ATTTGCCCGA
AGCTTCGGCC TGATTGCATC GGCAGGGACT GCGGCTGCGA TCATCTGGGC CAGCTTCGCC
GAACTGAACG AAGTCACGCA AGCCGTCGGA AGCTTCACGC CGGTCGGATC GGAACAGGTG
GTTCAGCATC TCGAGGGCGG CTTGGTCGAG CGCATCGCGG TTCGCGAGGG GGCGACGGTT
CAGAAAGGGG ATACGCTCAT CGTGCTTCGC GACGCCGGAA CGGCGGAGGA CGACGTCGCG
CTGGAACGGC AAAGGGTCGA TCTGTTGGCG CAGATCGAGA CCCAAGTGGC TCTGTTCGAG
GGACGCGAGC CGGCTTTCAC GAGTTCAAAC GGCCGCTATG CGGTCGAGGA AATCGCCAAC
ACCAATGCCT TCGCTGCCGC CAAGACCCTT GAGAAGAACG AGTATTCCCG CCTTTCGAGC
CAGATCGCGC AGGCCAGATA CAATCGCGAG GCCACTGCCA TCCAGTTGAA GGGAGCGCTC
GACGAGGTCG AGAACGCCGA GCGCGTGTCG AAGCGCTTCG CGGATTTGAT GCGGATCGGC
GTGGCGACGG GGCTGCAAGC CGAGGAGCGC CGTCAGGCGG TGGTCCGCGC GCGGTCGGCG
GCGGACGCTG CGGCGTCGCG CGAGCAGGGA GCGATCGAAC GCCTGGGCGA GGTCGAAAAG
CAACTGGTGA GCTACGGAGC GGAATTGCGC TCGAATCGGG CCCAGAAGGT TCGCGATCTC
GAGGCCAGTC TCAATGTCGT CGATGCCAAC ATCGCGAAGA AGAACCAACG CAAGCAGCGC
CTCACCATCA CCGCGCCCGT CGCCGCGCTG GTGAAATCGA TCGAGGTCAA TTCCATCGGT
CAGGTGGTCG GGTCCGGCCA GGCGCTGGCG ACGCTGGTCC CTCTCAATAC GCCGCTGGTC
GCCGAAACCA GCGTTCGCTC GTCAGAGATC GGTTATCTCC GCGTGGGACA ATCGGCGCAG
ATCCGCGTCG GCGCTTACAA TTTCACACGC TTTGGAAGCC TCGAAGGCGT CGTCGAGTCC
ATTTCGCCCT CGTCCTTCCA GATTGGCGGC CAGTATTATT ATCGCGTCAA GATCAAGCCG
GTCGACATCC GAATGCCCAA GGCTCCTGGA GCGGTGATCC AGCCGGGCAT GGAGGTGACC
TGCGAGATCA TCACCGGGCG CAAGACGGTC ATGGAATATA TTCTTACCCC CTTGCAAAGG
ACGTTGGGCT CTGCCTTCAA CGAACGGTGA
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| Protein sequence | MKFAAGIQSF RLAFERDKRL MDAITLPPMG RESAAFRFAR SFGLIASAGT AAAIIWASFA
ELNEVTQAVG SFTPVGSEQV VQHLEGGLVE RIAVREGATV QKGDTLIVLR DAGTAEDDVA
LERQRVDLLA QIETQVALFE GREPAFTSSN GRYAVEEIAN TNAFAAAKTL EKNEYSRLSS
QIAQARYNRE ATAIQLKGAL DEVENAERVS KRFADLMRIG VATGLQAEER RQAVVRARSA
ADAAASREQG AIERLGEVEK QLVSYGAELR SNRAQKVRDL EASLNVVDAN IAKKNQRKQR
LTITAPVAAL VKSIEVNSIG QVVGSGQALA TLVPLNTPLV AETSVRSSEI GYLRVGQSAQ
IRVGAYNFTR FGSLEGVVES ISPSSFQIGG QYYYRVKIKP VDIRMPKAPG AVIQPGMEVT
CEIITGRKTV MEYILTPLQR TLGSAFNER
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