Gene RPC_4248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4248 
Symbol 
ID3971590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4729941 
End bp4730600 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content66% 
IMG OID637927351 
Producthypothetical protein 
Protein accessionYP_534091 
Protein GI90425721 
COG category[S] Function unknown 
COG ID[COG5385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.486254 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.949249 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGGCA CCCCGATATC TGCCCCCGTC TCCGTCCCCG CTCCCGATGC GCTGGAACTC 
GCGGCGCTGT TGTGTTCGCG GGTCTGCCAC GATTTGATCA GCCCAGTCGG CGCCATCGTC
AATGGCCTCG AAGTGCTGGA TGACAGTCCG AAGCAGGAAG ATCGCGAATT TGCGCTCGAT
CTGATCCGCA AGAGCGCGCG CACCGCCTCG GCGCGATTGC AGTTCTGCCG GCTGGCGTTC
GGCGCGGCCG GCTCGGCCGG CGCGCAGATC GACCTCGGCG ATGCGCAGAA CATGGCGCGC
GGCCATCTCG AGGACGACAA GACCAAGATC GAATGGAATT TGCCGCGCAT TCTGTTGCCG
AAGAACAAGG TCAAGCTGCT GTTGAACATG CTGGTGATCG CCCAGCAGAC GATTCCGCGC
GGCGGCGTGC TGACGGTCGA AGCGGTGGGC GAGGGCGATG CGATGGGCTT CCGCGTCGCG
GCGTCCGGAT TGAACGCCCG CACCCAGACC AACATCGTCG ACATGCTGAG CGGCGCGCAT
GCCGGCTCGA TCGATGCCCA TGCGGTGCAG CCTTACTACA CGCGGCTGTT GGCGCAGGCC
TGCGGCTTCA GCGTGTCGCT GGCGCCGGCA GGCGAAGCCG TGGTGGTGAC GGCCTCCTGA
 
Protein sequence
MSGTPISAPV SVPAPDALEL AALLCSRVCH DLISPVGAIV NGLEVLDDSP KQEDREFALD 
LIRKSARTAS ARLQFCRLAF GAAGSAGAQI DLGDAQNMAR GHLEDDKTKI EWNLPRILLP
KNKVKLLLNM LVIAQQTIPR GGVLTVEAVG EGDAMGFRVA ASGLNARTQT NIVDMLSGAH
AGSIDAHAVQ PYYTRLLAQA CGFSVSLAPA GEAVVVTAS