Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4117 |
Symbol | |
ID | 3973167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4578405 |
End bp | 4579238 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637927221 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_533962 |
Protein GI | 90425592 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.363839 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCGGA TCAAGGCCGC CTGCCTGATC GGCTGGCCCG CGGCGCATTC CCGCTCGCCG ATGATTCATC ATTACTGGCT GCGCACGCTC GGCATCGAGG GCGGCTACGC CATCGAATCG GTGCCGCCGG AAGGTTTTGG CGAGTTCGTG CTGCATCTGT CGACGCACGG CTATCTCGGC GCCAACGTCA CCATCCCGCA CAAGGAGCGC GCGCTACTCT TGACCGAGCC GGACGCCCGC GCCCGTGCGG TCGGCGCTGC CAATACGCTG TGGTATGATG GTGAGACGCT GCGTTCGACC AATACCGATA TCGAAGGCTT CCTCAACAAT CTCGACGCCT GCGCGCCGGG CTGGGACGGA ATCGACGAGG CGCTGGTGCT CGGCGCCGGC GGTTCGTCGC GCGCCGTGGT GTTCGGGCTG ATCGAGCGCG GCATCAAGCG CATCCATCTC GCCAACCGCA CGCTGGACCG CGCCCAGGCG GTGGCCGATC AATTCAACGC CGACGTGGTG CCGACCGCCT GGCAGGATCT CGCCGCGGTG TTGCCGCGGG CGAAACTGCT GGTCAACACC ACCTCGCTCG GCATGAAGGG CCAGCCGGCG CTCGAGGTCG ACATCGGCTT GTTGCCGACG GACGCCGCGG TCGCCGATCT GGTCTATGTG CCGCTCGAGA CGCCGCTGCT CGCCGCCGCC CGCGCCCGCG GCCTCGCCAC CGCCGACGGC CTCGGCATGC TGCTGCACCA GGCGGTGCGC GGCTTCGAAT TGTGGTTCGG CACCAGGCCT TCGGTAACGC CCGAACTGCG CGCGCTGATC GAGGCGGATC TGGCGCCGGC GTAG
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Protein sequence | MTRIKAACLI GWPAAHSRSP MIHHYWLRTL GIEGGYAIES VPPEGFGEFV LHLSTHGYLG ANVTIPHKER ALLLTEPDAR ARAVGAANTL WYDGETLRST NTDIEGFLNN LDACAPGWDG IDEALVLGAG GSSRAVVFGL IERGIKRIHL ANRTLDRAQA VADQFNADVV PTAWQDLAAV LPRAKLLVNT TSLGMKGQPA LEVDIGLLPT DAAVADLVYV PLETPLLAAA RARGLATADG LGMLLHQAVR GFELWFGTRP SVTPELRALI EADLAPA
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