| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_4060 |
|---|
| Symbol | |
|---|
| ID | 3969309 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4510321 |
|---|
| End bp | 4511763 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637927164 |
|---|
| Product | proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| Protein accession | YP_533905 |
|---|
| Protein GI | 90425535 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1008] NADH:ubiquinone oxidoreductase subunit 4 (chain M) |
|---|
| TIGRFAM ID | [TIGR01972] proton-translocating NADH-quinone oxidoreductase, chain M |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.40537 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCTGA TTGCGCTTCT CTTGCTTCCG ATGCTCGGCG GCTTTGCGGC CTATTTCCTC
GGCGGACGTG GCGAGGCGCC ACGCTGGGTA TCGATCGCGT CGCTCGCCGT CACGCTCATT
GTGCTGATCG TCAGCGTCGC CGGTGGCGAC GATGGCCGTT GGCTGGCGCA GGTCGATCTT
CCCTGGGTGC CGTCGTTCGG AATTTCGATC AATCTCGCGC TCGACGGGCT GTCGGCGGCG
TTGGTCGGCA TCGCCGCAGG CCTCGGCATC ATCGGCGTGA TGGCCTCATG GCACGAGATC
AAAGTCGATT CCGGGCTGTT TCACGCCTGC CTGTGCTGGA CCGTCTCGGC CACCATCGGG
GTGTTTCTGT CGTTCGATCT GTTAGTGTTC GCCTTCTTCT GGGAGGCGCA GCTGATCCCG
AGCTTCATGC TGATCGCGGT GTGGGGCCAC GGCGCCAAGG AAAGTGCCGC GCTGAAATTC
CTGATCTTCA ACGCGGTGGC CGGCTTCGGC CTGCTGGCCG GGGTGTTCGG GTTGGCGTCG
ATGGCCGACA CCATGACCTT CAACGCCTTC ACGCTCGCCG AGCTGAAGCT GTCGACGCCG
ATGCAGGTCT GGCTGTTGCT GGGTTTTTCG CTGGCGTTCT TGGTCAAGCT GTCGGTGCCG
CCATTCCACG CCTGGCTGCC GGATGCCCAC ACGCTGGCGC CGACCGCGGG CTCGATCCTG
CTCGCCGGTT TATTGTTGAA GACCGGCGCC TACGGCCTGT TCCGGTTCAG CCCGATGCTG
TTTCCCGACG GACTCGTCGT GCTGGCGCCC TATGGCATCG CGCTGGGCGC TGCCGGTGCG
CTGTATGGCG GCGTGGTGGC CTGCGGTCAG ACCGACGCCA AGCGGCTGGT CGCCTACACC
TCGGTGGCGC ATATGTGCAT CGTGCTGATG GGCGTCGCCG CCGGAGTGGA ATACGCGCTG
GCCGGTGCGG CGGTGGAGAT GGTGGCGCAT TCGTTTTCCG CCTCGGCGCT GTTCCTGCTG
ATCGGCGCCT TGTACGAGCG CACCCAGACT CGCGACCTGC GCGAACTTGG CGGCTTGCAG
CAAAGCGCGC CGCGGTTCGC CGCGGCGTTC GCGCTGTTCT GTTCGGCGCT GCTGGCGCTG
CCGGGGACGG CGAATTTCGT CGGCGAGGCG CTGGTGGTGG TCGGCATCTT CCAAGTCAGC
TGGCCGTTTG CGCTGGTGGC GTTGAGCACG CTGATCGTCT CGGTGGTGTA CGGCACCCGG
CTGTTGAAGG GCGTCACCTT CGGCGCAGCC TCCCCGAAGG TCGTGCGCGA TCTCGGCTGG
CGTGAAGTCG CCACCGTGAT TGCTTTGGCC GTTGGCACTG TGCTGGTCGG CCTCTATCCG
CAAAGCGTCA TCGGCCTAGT TGGCCCGGCG ATCAAGGCGG CGCTGGTGCC GCAGCTGCCA
TGA
|
|---|
| Protein sequence | MALIALLLLP MLGGFAAYFL GGRGEAPRWV SIASLAVTLI VLIVSVAGGD DGRWLAQVDL
PWVPSFGISI NLALDGLSAA LVGIAAGLGI IGVMASWHEI KVDSGLFHAC LCWTVSATIG
VFLSFDLLVF AFFWEAQLIP SFMLIAVWGH GAKESAALKF LIFNAVAGFG LLAGVFGLAS
MADTMTFNAF TLAELKLSTP MQVWLLLGFS LAFLVKLSVP PFHAWLPDAH TLAPTAGSIL
LAGLLLKTGA YGLFRFSPML FPDGLVVLAP YGIALGAAGA LYGGVVACGQ TDAKRLVAYT
SVAHMCIVLM GVAAGVEYAL AGAAVEMVAH SFSASALFLL IGALYERTQT RDLRELGGLQ
QSAPRFAAAF ALFCSALLAL PGTANFVGEA LVVVGIFQVS WPFALVALST LIVSVVYGTR
LLKGVTFGAA SPKVVRDLGW REVATVIALA VGTVLVGLYP QSVIGLVGPA IKAALVPQLP
|
|---|
| |