| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3942 |
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| Symbol | |
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| ID | 3969327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 4390194 |
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| End bp | 4393760 |
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| Gene Length | 3567 bp |
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| Protein Length | 1188 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637927046 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_533787 |
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| Protein GI | 90425417 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0478025 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTG CCGAATTCCA AGTGCGCGGC GTGGACGATC CACGGCTCGC GATCCACGCC
ACCAGCAGCC TGCCGGCCTG GTTGTGGGCG ATCGACGGCA CGCGCATCGT CTGGGCCAAT
CCGGTCGGGG CGCGGCTGTT CGGCGCGCCG AACGGCGCGG CGCTCGGCAC CAAGAGCTTC
GGCCTGGCCG ATCCGCATCG CCGCCAAGTG GCGCAGCTCG CGGGCCGGTT GCCGCCGAGC
GGCGCGACGC GGCTGGAACG GCTGCGCGGT TTCGGCGCGC CGCTCGGCGC GCTGGTGACC
TGCGGCTGCG CCCGGCTGGA GTTTGCCGAC GGCAGCCATG GCGTGCTGGT GGTCGCCGCC
GAGCCGATCG GCCGCGCCAT GCCGTTGGTC GAGCGGCTGC AGCGGTTGGT CGAAGGCATC
GAGACGCCGA TCGCGACGTT CGCGCGCGAC GGGCTGTTCA TCGGCGCCAG CGACGCGGCA
CGGGCGCTGC TCGGATTTCG CAATCTCGCC GAGGCCGGAT TGGAAACGGC GCGCCACGAC
GCGCTGACGC TGGGCCGCGC CGAGATGCCG ATCGGCATCG GCCGCATGGT GCTGCAGCGG
GTCGGCGCCG GCGCCGATGT CGGCTTGGTG GCGCTGCTGG TGCCGGGCGC AACCGAGCAG
GCGGCGCAGC CGCGCTCGCA TCCGTCGGCG GCCGACGAGG CGCAGCAAGT GTCGCAGCCC
GACGCGCCGC AACACCCTGA TCTGGCCAAA GAACCGCCGC CCGAACCATC GCAGCCGGCC
GAGCCGACCG AAGCCGCCGC CGAACCCGCA GAACCGCCGC CGTCCGTCGG TTCCGAGGCC
ACGGCCGACC TCGCAGCCGA CCCGCTGTCG GACCACGAAG CGCCCGCAAC CACGCCCGAA
GCCCCGGCCG AATTCTCGCC GCTCGACGAT GCCGCAGCCC CGGCCGAGCC ATCGCCCGCA
GCACCGTCGG CCGACCTGAT CAGCGCGGAA ACGCCGGCCG AGCCGGCGCT GTCCTGGAAC
GACGCGGCGC CGGTTGAAGC ATCGGCCGAG CCGGTCGACG CTGCCCTCGA TCCCGCCGCC
ACCGATGATC TCGCAGCCGA GCATGCCAAG CCCGCAACGC CCTCACCCGA ACCGCCTGCC
GCCGCGCCGA CCGCCACCGC GGACGCCGAT GTCGCGCTGC CCTGGTTCGC GGAACCGTTG
CCGCCGCGAC GCCACCCGCT GCGCTTCACC TGGCAGCTCG ACGCCGAGGG CCGGTTTTCC
ATTGTCTCCG ACGAGTTCAG CCGGCTGATC GGGCCGCGCA CCGCCGCCGG ATTTGGCCGG
CTGTGGCACG AGATCGCCGC GCTGTTCGGG CTCGATCCCG ACCGGCATTT CGCCGCCGCG
ATCGCCACCC GCAACACCTT CAGCGGCATC ATGCTGAACT GGCCGGTCGA CGGTCCCGAC
CAGCGTCTTG CCGTCGAAAT GTCGGGATTG CCGGTTCAGG ATCGCGACGG CAATTTCCGC
GGCTATCGCG GCTTCGGGGT TTGCCGCGAC CTCGCCGGTC TCAACCGGCT CGCCGATGCG
CGGCGCAACG ACGACGACAC GCTTCCGGCG CAGCCGCTGT CCGCCGGCAT TGCGCCGGTC
GATGCATCGT TCGCCGCGGC GTCGGTCAGC GCAAGCGAGC CGAACGGCAC CGACCTCTCC
GACCAGCCCT CGCCGGCTGA CATGTCTTCC CCAACAGATC CGGAACCAGC TGTGGATACG
CCCAAAAATG TTCTGCCGTT CAGGCAGACC AACGATCCGA GATCGCCGGC GCTGACTCCG
GTCGAAAACA ACGCCTTCAA CGAACTGGCG CGGCAATTGT CAGCGCGGCT GGAAAGCGAA
GCCCCGGACC TGATCGCAGA GCCCGCGGCA TCGCAGCCCG ACGCGCCGAG CCGGCCCGAT
CCGACCGCGC CCGACTCGCG CGAGCCCGAG TCGCGCGAGC CGCAGGCCGC GCAATCCGAG
ACCGCGGGCG AGCCGTCCGA ACCATCCGCC GCCGCGCCGG CGACGCAGCC GGCGCGCGGC
GAAGCGCTGC GCGACACGCT GCTGCTCGAG CTGTTGCCGG TCGGCGTGCT GATCTATCGG
CTCGACCGGC TGCTTTACGC CAACCGCGCC TTCCTCGAGC GCACCGGCTT CGCCAGCGTC
GCCGCGCTGG ATGACGCCGG TGGTCTCGAC GTGCTGTACG TCGAGTCCGG CGCCGACGGA
TCCAGCAGCA ACTCCGACGA TGGCGCGCCG ATCACCATCA CCGCGGCCCA GCGCGCCGCC
GACCAGCCGT CGTCGCAGCC GGCAGAGGGA CGGCTGTTCA CCATCAGCTG GGACGGCGAA
CCGGCGCTGG CGTTGATTTT CTCCGAGACC GCGGCCGAAA CCGCGATGGC CGCCGAAGCC
GAACCGTTCG CCGAAGCGCC GGCGATCGAT CCCGATCTGC CCTCGGCGGT CGGCGCCGCC
AACGCCGAAG AACTCGGCGC GATCCTCGAC ACCACCGCCG AAGGCATCGT GATGTTCGAT
GCCGAGGGCC AGTTGCACGT CTGCAACCGC AGCGCCGAGG CGCTGTTCGG CTATCCCGGC
GACAACCTGG TGCAGCGCAA TCTGATCGAA CTGTTCGCGC CGGAGAGCCA GCGCGTGCTG
CTCGACTATA TCGAGGCGAT CAAGAGCGAT GGCGCGGCGA GCCTGCTCGA CCCTGGCCGC
GAAGTGCTCG GCCGGGTGCG CGAAGGCGGG CTGATCCCGC TGTCGGCGAT CATCGGCCGC
ACCCGCCACG ACGGCCCGAA TTACTTCGCC GTGTTCCGCG ATCTGTCGCA AGCCAAGAAG
ACCGAGTCGG AATTGATCCA GGCGCGGCGC CAAGCCGAGC GCGCCGCCAA CGCCAAGGCC
GACGTGCTGG CGCGGCTCAG CCACGAGATC CGCACCCCGC TCAACGCCAT TTTGGGCTTC
ACCGAGGTGA TGATCGAGGA GCGCTTCGGC GCGCTCGGCA ACGAGCGCTA CGTCGAATAC
ATGAAGGACA TCCGCGCCTC CGGCGAGCGC GTGATCGCCA TCGTCAGCGA TCTGTTGGAT
CTGTCGCGGA TCGAGACCGG CAAGCTGGAG CTGGCCTTCG CGCCGCAGCA TCTCAACGAA
CTGGTCGAGC AATGCGTCGG CGTGATGCAG CCGCAGGCCA ATCGCGAGCG CATCATCATC
CGCACCTCGC TGGCGCATCA ATTGCCCAAC GTGGTCGCCG ACGCCCAGGC GCTGCGCCAG
ATCACCCTCA ACCTGATCGG CACCTCGATC CATCTCGCCA ATGCGGGCGG CCAAGTGATC
GTTTCCACCG CGCTGTCCGA CTTCGGCGAC GTCATGCTGC GGGTGCGCGA CACCGGCAGC
CGGCTCAACG AGCACGAACT CGCCGCCGCG ATGGAGCCGT TCCGCACCGC GCCGCCGAGC
GATCACAGCT CGGAAGCGCC GGGCGTCAGC CTGTCGCTGA CGAAAGCGCT GGTGGAAGCC
AACCGCGCGC AATTCCACAT CAAGACCGCG CCGCATTCCG GCACACTGAT CGAGGTGATC
TTTTCCGACG CGATGCAGAA GGCGTGA
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| Protein sequence | MTSAEFQVRG VDDPRLAIHA TSSLPAWLWA IDGTRIVWAN PVGARLFGAP NGAALGTKSF
GLADPHRRQV AQLAGRLPPS GATRLERLRG FGAPLGALVT CGCARLEFAD GSHGVLVVAA
EPIGRAMPLV ERLQRLVEGI ETPIATFARD GLFIGASDAA RALLGFRNLA EAGLETARHD
ALTLGRAEMP IGIGRMVLQR VGAGADVGLV ALLVPGATEQ AAQPRSHPSA ADEAQQVSQP
DAPQHPDLAK EPPPEPSQPA EPTEAAAEPA EPPPSVGSEA TADLAADPLS DHEAPATTPE
APAEFSPLDD AAAPAEPSPA APSADLISAE TPAEPALSWN DAAPVEASAE PVDAALDPAA
TDDLAAEHAK PATPSPEPPA AAPTATADAD VALPWFAEPL PPRRHPLRFT WQLDAEGRFS
IVSDEFSRLI GPRTAAGFGR LWHEIAALFG LDPDRHFAAA IATRNTFSGI MLNWPVDGPD
QRLAVEMSGL PVQDRDGNFR GYRGFGVCRD LAGLNRLADA RRNDDDTLPA QPLSAGIAPV
DASFAAASVS ASEPNGTDLS DQPSPADMSS PTDPEPAVDT PKNVLPFRQT NDPRSPALTP
VENNAFNELA RQLSARLESE APDLIAEPAA SQPDAPSRPD PTAPDSREPE SREPQAAQSE
TAGEPSEPSA AAPATQPARG EALRDTLLLE LLPVGVLIYR LDRLLYANRA FLERTGFASV
AALDDAGGLD VLYVESGADG SSSNSDDGAP ITITAAQRAA DQPSSQPAEG RLFTISWDGE
PALALIFSET AAETAMAAEA EPFAEAPAID PDLPSAVGAA NAEELGAILD TTAEGIVMFD
AEGQLHVCNR SAEALFGYPG DNLVQRNLIE LFAPESQRVL LDYIEAIKSD GAASLLDPGR
EVLGRVREGG LIPLSAIIGR TRHDGPNYFA VFRDLSQAKK TESELIQARR QAERAANAKA
DVLARLSHEI RTPLNAILGF TEVMIEERFG ALGNERYVEY MKDIRASGER VIAIVSDLLD
LSRIETGKLE LAFAPQHLNE LVEQCVGVMQ PQANRERIII RTSLAHQLPN VVADAQALRQ
ITLNLIGTSI HLANAGGQVI VSTALSDFGD VMLRVRDTGS RLNEHELAAA MEPFRTAPPS
DHSSEAPGVS LSLTKALVEA NRAQFHIKTA PHSGTLIEVI FSDAMQKA
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