| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3903 |
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| Symbol | |
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| ID | 3969266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 4332509 |
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| End bp | 4334506 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637927006 |
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| Product | conjugal transfer coupling protein TraG |
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| Protein accession | YP_533748 |
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| Protein GI | 90425378 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.342715 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCCGCCA CCAAGATCCT CTGGGGTCAG ATCATCGTCG TCTTCGCGGT CGTCCTCATC
ACCATGTGGG CGGCGACGCA ATGGGTCGCG TGGAAGCTTG GCTTCCAGCC GCAACTCGGA
CAGCCCTGGT TTGAGCTGCT GCCCGGTGTT CCGGTCTATC TTCCTCCGGC GTTTTTCTGG
TGGTGGTACG CCTACGACGC CTATGCGCCT GACGTGTTCG TCGAGGGGGC TTACATCGCG
GCGTCAGGTG GGTTCCTGGC GATTGCGGTT GCGATCGGCA TGTCGGTGTG GCGCGCTCGT
GAGGTGAAGA TTGCCGCCAC CTATGGCTCG GCGCGCTGGG CGTCGCTGCC TGAGCTTCGT
GCCGCCGGTC TCACCGGGCC GGACGGTGTC GTGCTCGGCC GGTTCGAGCA GGACTATTTG
CGTCACGATG GTCCGGAACA TGTGCTGTGT TTTGCGCCGA CCCGGTCCGG CAAGGGCGTC
GGTCTGGTGG TGCCCACGCT TCTGACGTGG CCGGGCTCAT GCATCGTCCA TGACATCAAG
GGCGAGAACT GGACACTGAC GTCGGGCTAT CGGGCCCGGC ATGGCCGGGT GTTGCTTTTC
GATCCGACCA ATTCGAGGTC GGCGGCCTAC AACCCGCTGC TCGAGGTTCG CCGCGGCGAG
TGGGAGGTCC GCGACGTCCA GAATGTCGCC GATGTGCTGG TTGACCCCGA GGGCTCGCTG
GAGCGGCGCA ACCATTGGGA AAAGACCAGC CATGCTCTGC TGGTCGGCGC AATTCTTCAC
GTGCTCTATG CCGAACCGGA CAAGACGCTC GCCGGTGTTG CCGGCTTTCT GTCCCATCCG
AAGCGGCCGA TCGAGGCAAC GCTACGGGCG ATGATGACGT CGGCGCATCT TGGGGAGGCG
GGTCCGCATC CGGTGATCGC ATCTGCCGCT CGCGAGCTCC TCAACAAGAG CGAGAATGAA
CGATCCGGCG TGCTCTCGAC CGCGATGTCG TTCCTTGGTC TCTACCGCGA TCCGGTGGTG
GCGAAGGTGA CGCAGCATTG CGACTGGCGC ATCAGTGATC TGGTCGAGGG CGAGCGTCCC
GTCACGCTCT ACCTGGTGGT GCCGCCATCC GACATCAGCC GGACCAAACC GTTGGTGCGG
CTGATCCTCA ACCAGATCGG CCGTAGGCTC ACCGAAGATC TGCATCCGAA AGGGCGGCGG
CATCGATTGC TGCTGATGTT GGACGAATTT CCGGCGCTGG GCCGGTTGGA TTTCTTCGAG
TCGGCGTTGG CCTTCATGGC CGGTTATGGG CTGAAAAGCT TTCTGATTGC GCAGTCGCTC
AATCAGATCG AAAAGGCCTA CGGGCCCAAC AACGCCATTT TGGACAATTG CCACGTCCGG
GTCTCGTTTG CCACCAACGA CGAGCGCACC GCCAAGCGGG TGTCGGATGC GCTTGGCACC
GCGACCGAGA TGCGGGCGAT GAAGAACTAT GCCGGGCACA GGCTCAGTCC CTGGCTCGGT
CATCTGATGG TGTCGCGGCA GGAGACAGCA CGACCACTGC TGACGCCCGG CGAGGTGATG
CAACTGCCGC CCAGCGATGA ATTGGTGCTG ATCTCAGGTT GTCCGCCGAT CCGGGCCAAG
AAGGCGCGCT ACTTCGAAGA TCCAAGATTG ACCGAGCGGA TCCTGACGCC GCCGTTGCTG
GAGGCAAAGC AGGGCAGTAC GAAGCCAGAC GATGACTGGT GCCGATTGCC ATCTCCCGCG
GCAGGCCGTG ACGGTCGGAT TTCCGACGCG CCGGGAGACG ATTCCACGGG TGATCCCGCC
AACGCCGGCA TCCGCCGGGA ACCAGAGCTT CCCGACCACG AGGAAATTGC CCCGGAGCGA
GCGACCCCGC CACCTGAGTT TGGGTTTGTC GAAGACGAGC CCGACGACGA AGCAGCCCGT
GCCCGTGCAT TGCGTCGGCA GGTTCGTGGG CTTGCACGCC AGGCCGCGAT GGATCCCGGC
GATGGTATCG AACTCTAG
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| Protein sequence | MSATKILWGQ IIVVFAVVLI TMWAATQWVA WKLGFQPQLG QPWFELLPGV PVYLPPAFFW
WWYAYDAYAP DVFVEGAYIA ASGGFLAIAV AIGMSVWRAR EVKIAATYGS ARWASLPELR
AAGLTGPDGV VLGRFEQDYL RHDGPEHVLC FAPTRSGKGV GLVVPTLLTW PGSCIVHDIK
GENWTLTSGY RARHGRVLLF DPTNSRSAAY NPLLEVRRGE WEVRDVQNVA DVLVDPEGSL
ERRNHWEKTS HALLVGAILH VLYAEPDKTL AGVAGFLSHP KRPIEATLRA MMTSAHLGEA
GPHPVIASAA RELLNKSENE RSGVLSTAMS FLGLYRDPVV AKVTQHCDWR ISDLVEGERP
VTLYLVVPPS DISRTKPLVR LILNQIGRRL TEDLHPKGRR HRLLLMLDEF PALGRLDFFE
SALAFMAGYG LKSFLIAQSL NQIEKAYGPN NAILDNCHVR VSFATNDERT AKRVSDALGT
ATEMRAMKNY AGHRLSPWLG HLMVSRQETA RPLLTPGEVM QLPPSDELVL ISGCPPIRAK
KARYFEDPRL TERILTPPLL EAKQGSTKPD DDWCRLPSPA AGRDGRISDA PGDDSTGDPA
NAGIRREPEL PDHEEIAPER ATPPPEFGFV EDEPDDEAAR ARALRRQVRG LARQAAMDPG
DGIEL
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