| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3895 |
|---|
| Symbol | |
|---|
| ID | 3969258 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 4325613 |
|---|
| End bp | 4326785 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637926998 |
|---|
| Product | conjugal transfer protein TrbL |
|---|
| Protein accession | YP_533740 |
|---|
| Protein GI | 90425370 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
|---|
| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.261118 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGGCA CCGGGGTTAT CGATCGCTTT CTCGAGGTCT TTACCCGTTT CATTGATTCG
GGCTTTGGCT TGCTCAATGG CGAAGTGGCG TTTCTGGCCA CCACGCTGGC CGCAATCGAC
ATCACGCTCG CGGCGATCTT CTGGAGCTGG GCAGCCGACG AGGACATCAT TGCCCGGCTC
GCAAAGAAGA CGCTGTTCGT CGGCGTGTTC GCCTACCTGA TCGGCAATTG GAATAGCCTC
GCCCGCATTG TTTTCGAGAG TCTTGCAGGA CTAGGACTGA AGGCGTCCGG CACCGGGATG
TCGATGGCCG ATCTGCTCAG GCCCGGCCGG GTCGCCCAGG TCGGCATCGA TGCCGGACGA
CCGATCCTGG ACTCGATCTC GGGTCTGTTG GGCTACATCA GCTTCTTTGA GAATTTTGTT
CAGATTGTCG TGTTGCTGTT CGCCTGGATC GTGGTGCTGC TCGCCTTCTT CATCCTGGCG
ATCCAGCTGT TCGTGACCCT GATCGAGTTC AAGCTGACGA CGCTCGCGGG TTTCGTGCTG
ATCCCATTCG GCCTGTTCGG CAAGACCGCA TTTGCCGCCG AACGCGTGCT TGGCAACGTC
ATCTCATCCG GCATCAAGGT GCTGGTTCTC GCCGTCATTG TCGGCATCGG CACCACGCTG
TTCTCGCAAT TCACCGCTGG ATTCGGCGGC AACCAGCCGA CCATCGAGGA TGCTCTGACG
CTGGTGCTCG CCGCATTGTC GTTGCTGGGC CTCGGCATTT TTGGTCCGGG GATCGCCAAC
GGCATTGTGT CGGGAGGTCC GCAGCTCGGC GCAGGTGCGG CGGTTGGGAC CGGTCTTGCG
GCGGGCGGCA TCGTCGCTGC CGGTGCGGCT GGGGCGACGA TGGCTGCCGG GGCCGCTGGC
GGCGTTCTTG CCGGCGGTGC GCGTGGTGCC GCCACTTTGA TGCAGGCGGG TGGCTCAACC
ATCGCCAGCC CGCTGCGCCG AAGCGCAGCC GATCAATCAG GGCAGGGAGC AGCGTCGCCA
GGTTCGCCGT CTGGCGGTGA ACCGGCGTGG GCCACCCGCA TGAAGCGCTC GCAAACCGTC
GGCCACGGGG CTTCCGCCGC GGTCCATGCG GTCCGTTCCG GTGATCATGG CGGCGGCGGC
GCGTCGGTCG ATGTTTCCGA GGGGAAAAGC TGA
|
|---|
| Protein sequence | MGGTGVIDRF LEVFTRFIDS GFGLLNGEVA FLATTLAAID ITLAAIFWSW AADEDIIARL
AKKTLFVGVF AYLIGNWNSL ARIVFESLAG LGLKASGTGM SMADLLRPGR VAQVGIDAGR
PILDSISGLL GYISFFENFV QIVVLLFAWI VVLLAFFILA IQLFVTLIEF KLTTLAGFVL
IPFGLFGKTA FAAERVLGNV ISSGIKVLVL AVIVGIGTTL FSQFTAGFGG NQPTIEDALT
LVLAALSLLG LGIFGPGIAN GIVSGGPQLG AGAAVGTGLA AGGIVAAGAA GATMAAGAAG
GVLAGGARGA ATLMQAGGST IASPLRRSAA DQSGQGAASP GSPSGGEPAW ATRMKRSQTV
GHGASAAVHA VRSGDHGGGG ASVDVSEGKS
|
|---|
| |