| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3713 |
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| Symbol | |
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| ID | 3972336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 4132477 |
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| End bp | 4133955 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637926823 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_533567 |
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| Protein GI | 90425197 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAGCA AAGACCACCG GCCGATGCGC AGTCCGCTGG CACGCGCCCT GTGGTTTTCC
GCGGCCGCCG CGCTGACCAT CAATCCGGCG CTCGCCCCGG CGCTGGCCGC CGACTATCGC
CCGATGGCCG CCGCCGCCGA TGGCCAGCTG AACGCCCGTT TTCTGGCGCT CGGCGTCAGC
AAGTCGGTGG TGATCGACCT GCCGCGCGAC ATCAAGGATG TGCTGGTCGC CGATCCCAAG
ATCGCCAACG CCGTGGTGCG TTCGGCGCAG CGCGCCTACA TCATCGGGGC TGCGATCGGC
CAGACCAATA TCGTGTTCTT CGACGCCGCC GGGCTGCAGA TCGCCGCCTA CGACATCGCG
GTGACGCGCG ACCTCAACGG CATCCGCGCC GCCATGAAGC AAACCCTGCC GGGCGCCGAT
ATCCGGGTCG AGGGCGTCGG CGTCAAGAGC GTGATGCTGA CCGGATCGGT GTCGAGCCCG
ATCGAAGCCC AGCAGGCCGG CGACCTTGCG GCACGGCTGG TCGATGGCCC GGACAACGTC
GTCAACAGCA TCGCGGTGCG CGGTCGCGAC CAGGTGATGC TGAAGGTGAC CGTCGCCGAA
GTGCAACGCG ATATCGTCAA GCAACTCGGC GTCGACCTCA CCGCGCGCAT GAACTACGGC
ACCGCGGTGG TGAATTTCAA CAACAGCAAC CCGTTCACCG CCTATGGCAG CAACCTGGTG
TCCGGCAACG CCACCACCGC CTCGTTCGGC GGCGGCACCA CGCCCTCGGT CACGGCGACG
CTGCGGGCGA TGGAAAGCGC CGGCGTGGTC CGCACCCTGG CCGAACCGAA CCTGACGGCG
ATTTCCGGCG AATCCGCGAC CTTCGTGGCG GGCGGCGAGT TTCCGGTGCC CGCCGGCTAT
TCCTGCGACC CGGTCACGCA TGTCTGCACC ACCCAGATCA GCTTCAAGAA ATTCGGCATT
TCGCTGAACT TCACCCCGGT GGTGATGAGC GAGGGGCGGA TCAGCCTGCG GGTGATGACC
GAGGTCTCGG AAATCTCCAC CGACAATTCG ATCACCCTGT CGCAGGCGGT GAGCACCACC
ACCACCAATT CCATCACCGT GCCGTCGATC AAGACCCGCC GGGCGGAAAC CACGCTGGAA
ATTCCCTCGG GCGGCTCGAT GGCGATGGCC GGTCTGATCC AGGAACAGAC CAAACAGGCG
ATGAATGGAT TGCCGGGTCT GGCGCAGCTG CCGGTTCTCG GCGCCCTGTT CCGCAGCCGC
GACTACGTCA ATCGCAACAC CGAGCTGTTG GTGCTGGTGA CGCCGTACGT CGTGCGCGCG
GTGGCGCAGA AGGATCTGTC GCGGCCGGAC GACGGATTTG CCGCGGCCTC GGACCCGCAG
GCGGATCTGA TCGGCAACAT CAACCGGATC TACGGCGTGC GCGGGCGCAC CGAACCCGCC
AAGAATTATC GCGGCACCTA TGGCTTCATC ACCGATTGA
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| Protein sequence | MTSKDHRPMR SPLARALWFS AAAALTINPA LAPALAADYR PMAAAADGQL NARFLALGVS
KSVVIDLPRD IKDVLVADPK IANAVVRSAQ RAYIIGAAIG QTNIVFFDAA GLQIAAYDIA
VTRDLNGIRA AMKQTLPGAD IRVEGVGVKS VMLTGSVSSP IEAQQAGDLA ARLVDGPDNV
VNSIAVRGRD QVMLKVTVAE VQRDIVKQLG VDLTARMNYG TAVVNFNNSN PFTAYGSNLV
SGNATTASFG GGTTPSVTAT LRAMESAGVV RTLAEPNLTA ISGESATFVA GGEFPVPAGY
SCDPVTHVCT TQISFKKFGI SLNFTPVVMS EGRISLRVMT EVSEISTDNS ITLSQAVSTT
TTNSITVPSI KTRRAETTLE IPSGGSMAMA GLIQEQTKQA MNGLPGLAQL PVLGALFRSR
DYVNRNTELL VLVTPYVVRA VAQKDLSRPD DGFAAASDPQ ADLIGNINRI YGVRGRTEPA
KNYRGTYGFI TD
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