| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3586 |
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| Symbol | |
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| ID | 3972825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3989493 |
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| End bp | 3990602 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637926696 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_533443 |
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| Protein GI | 90425073 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTGCGT CGGCGCAAAT GGGGCCATCC GGGCCGCCAG CGGTCGGCGT TGCGCCCGCA
GCGTTACGCC CGGTGGCACA AAAGGAGCAG ATCACGGGGC GGGTCGAAGC GGCTGAGCGC
GTCGAGATCG TGGCTCGGGT CTCGGGCTTC CTTGAACAGC GACTGTTCAC CGAAGGGGCC
GAGGTCAAGG CCGGTCAGCT GTTGTACCGG CTCGAGCGCG GCTCCTACGA AGCCGCGGTT
GAGACCGCCC ACGCCGCGAT CGATCAGGCC AAAGCCCAGC TGGAAAACGC CGGCATCACG
CTGGCCCGTT CGCAGAAGCT GCTGGAGGGG CCGGCCGGGA TGCAAAGCTC GGTCGATACC
GCGCGGGCCA ACAAGCTCAC CGCCGCCGGG CAGTTACGCG CCGCCGAAGC GCAATTGCGC
CAGGCCGAGA TCAACCTCGA CTACACCGAA ATCCGCTCGC CGATCGACGG TCGGATCGGC
CGCGCCGTGA CCAAGGTCGG CAATCTGGTC GGCCCCACCA GCGGGCCGCT GACGACGATC
GTCAGCCAGG ATCCGATGTA TGTCGTGTTT CCGGTTGCGA CGCGGCGGGT GATGACGCTT
CGCTCAAAGC TGATCAAGGA CGGCTTCGCC GCCTTGAAGG TCCGGCTGAG GCTGCCGGAC
GGACGACTCT ACGACCGCGA CGGTGAAGTC ACCTTCATCG ACATCAATGT TGCGCAGGAC
ACCGACACCA TCCTGCTCCG GGCGACGATT CCCAATCCGC CGCTCGGCGA GCAGAAGGAC
GGTCAATTTC CCCGCGAACT GATCAACGGC GCATTGGTCA CCGTCTTGCT GGAGGACGCC
GAGCCGGTGC AAGTCGTCGC GGTGCCTCGG CAAGCGGTGC TGTCGGACCA GCGTGGCAGC
TACGCCTATG TGATCGATGC AGGCAACGTG GCGCGGCGCC GCGATCTGCA GCTCGGTCCT
TCGACGCCGG AATGGGCGTC GGTCGAGCAG GGGCTGAGCG CGGGCGAGCA GGTAGTCGTC
GAAGGCGTGC AACGGGTTCG CGCCGACACG CCGGTGAAGC CGGATCCAGT CTCATCCGGC
GATGCCGGCG CGCACCAGAA CCCGGGTTAG
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| Protein sequence | MVASAQMGPS GPPAVGVAPA ALRPVAQKEQ ITGRVEAAER VEIVARVSGF LEQRLFTEGA
EVKAGQLLYR LERGSYEAAV ETAHAAIDQA KAQLENAGIT LARSQKLLEG PAGMQSSVDT
ARANKLTAAG QLRAAEAQLR QAEINLDYTE IRSPIDGRIG RAVTKVGNLV GPTSGPLTTI
VSQDPMYVVF PVATRRVMTL RSKLIKDGFA ALKVRLRLPD GRLYDRDGEV TFIDINVAQD
TDTILLRATI PNPPLGEQKD GQFPRELING ALVTVLLEDA EPVQVVAVPR QAVLSDQRGS
YAYVIDAGNV ARRRDLQLGP STPEWASVEQ GLSAGEQVVV EGVQRVRADT PVKPDPVSSG
DAGAHQNPG
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