| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3556 |
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| Symbol | |
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| ID | 3973756 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3954226 |
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| End bp | 3954771 |
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| Gene Length | 546 bp |
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| Protein Length | 181 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637926667 |
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| Product | conjugal transfer protein precursor |
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| Protein accession | YP_533414 |
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| Protein GI | 90425044 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4959] Type IV secretory pathway, protease TraF |
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| TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACGCGGC TTGCCTATGT CATGGCGACG TCCTTTGTCG TGCTGGTGAC GATCGGCCGA
TCGGCCGTCA CGGTCGCGCC TAAGCTGATC TGGAATGCAT CGGCAAGTGC GCCGGTTGGC
CTCTACACGG TATGGCCGGC GGCTGATCTC GGCGTTACCG ATCTGGTCGC CGTTGAGGCG
CCCGAACCCT TGGTGAGTTT TCTCATTGCG CGGGAGTATT TGCCGCGCGG TCTGCCGCTG
ATGAAGCGCG TCGCAGCCCT TCCCGGACAA ACCGTGTGTC GCTCCGGCAG CAGCGTGACC
ATCGACACCG TCACGGTAGG GGAGGCGCTG CCCCACGATC GGCGCGGCCG CGGTCTGCCG
GTGTGGCAAG GGTGCCAGAC GCTCGGCCTG AGCGAAATCT TCCTGATGAA CTGGGACGTC
CAGGACAGCC TCGATGGCCG TTACTTCGGA CCGATCCCCA AAAACTCTGT CGTCGGTCGC
GCGCTTCCGC TGTGGACCGA CGAGGGAGGT GACGGCCGCT ACCAATGGCG CGCGCCGACA
CGCTGA
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| Protein sequence | MTRLAYVMAT SFVVLVTIGR SAVTVAPKLI WNASASAPVG LYTVWPAADL GVTDLVAVEA
PEPLVSFLIA REYLPRGLPL MKRVAALPGQ TVCRSGSSVT IDTVTVGEAL PHDRRGRGLP
VWQGCQTLGL SEIFLMNWDV QDSLDGRYFG PIPKNSVVGR ALPLWTDEGG DGRYQWRAPT
R
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