| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3296 |
|---|
| Symbol | |
|---|
| ID | 3972561 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3651981 |
|---|
| End bp | 3652850 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637926407 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_533157 |
|---|
| Protein GI | 90424787 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4105] DNA uptake lipoprotein |
|---|
| TIGRFAM ID | [TIGR03302] outer membrane assembly lipoprotein YfiO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCTCT GCGGCGGCGC TCGCACCGCC CGCGGTTTGC GGTTCGCCGC CAGCCTGATC
GTGCTGACGC TGCCGCTCAG CGGCTGCGGC ACCGGCGCGC TGTGGGACAA GTTCATGACC
AAGGATGAGA CCTACACCGA CGAGCCGGCC GACAAGCTCT ATAACGAGGG CTTGTACCTG
ATGAACAAGG GCAAGGACCC CAAGGCGGCG TCGAAGAAGT TCGAGGAAGT CGATCGTCAG
CATCCGTATT CCGACTGGGC GCGCAAATCG CTGCTGATGT CGGCCTACGC GTTCTATGAG
GCCGGCGACT ACGACAGCTG CATCGGCTCC GCGACGCGTT ACGTGACCAT GCACCCGGGC
AGCCCGGACG CGGCTTACGC GCAATATCTG ATCGCCGCCT CGCATTACGA CCAGATCCCG
GACATCTCCC GCGACCAGGG CCGCACCGAG AAGGCGATCG CAGCGCTCGA AGAGGTGATC
CGCAAATATC CGACATCGGA ATACGCCACC TCAGCCAAGA AGAAGCTGGA AGGCGCCCGC
GACCAATTGG CCGGCAAGGA AATGAATGTC GGCCGCTATT ACATGGAAAA GCGCGATTAC
ACCGCGGCGA TCAACCGCTT CAAGACCGTG GTGACGCGCT ACCAGACCAC GCGGCACGTC
GAGGAGGCGC TGGCGCGGCT GACCGAGGCC TATATGGCGA TCGGCATCGT CGGCGAGGCG
CAGACCGCCG CCGCCGTGCT TGGCCACAAC TTTCCTGACA GCAAGTGGTA CCAAGACGCC
TACAATCTAG TAAAGTCCGG CGGAGTTGAG CCGAGCGAGA ATCGGGGCTC TTACATCAGC
AAGGCCTTCA AGAAGCTCGG CCTCGGTTAG
|
|---|
| Protein sequence | MVLCGGARTA RGLRFAASLI VLTLPLSGCG TGALWDKFMT KDETYTDEPA DKLYNEGLYL
MNKGKDPKAA SKKFEEVDRQ HPYSDWARKS LLMSAYAFYE AGDYDSCIGS ATRYVTMHPG
SPDAAYAQYL IAASHYDQIP DISRDQGRTE KAIAALEEVI RKYPTSEYAT SAKKKLEGAR
DQLAGKEMNV GRYYMEKRDY TAAINRFKTV VTRYQTTRHV EEALARLTEA YMAIGIVGEA
QTAAAVLGHN FPDSKWYQDA YNLVKSGGVE PSENRGSYIS KAFKKLGLG
|
|---|
| |