| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3222 |
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| Symbol | |
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| ID | 3971944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3570987 |
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| End bp | 3571973 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637926332 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_533083 |
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| Protein GI | 90424713 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.509299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGGCA TCGCTTGCGG CCTGCTGGCC GCGCTCCTCG TTCCATCGGC GATGCTCCGC
GCCGAGCCGC TCACGGTAGC TGCGCGAACG GTGGCCGACG ATAAGGCGGT GTTCGCCACC
GTGGAGAGCG TCAGCGTGGT GCCGGCGCGC GGCCGGATCG GCGGCACGGT GGTGCAGCTC
AAGGTCAAGG AAGGCGACGC CGTCACCCGC GGCCAGGCCA TCGCCGCGAT CGGCGACGAG
AAGCTGGCGC TGCAGATGAA CGCGCTGGAC GCGCAGATCG CGGCGTTGCA GGCGCAATCC
AGCCAGGCGC AGATCGATTT CAATCGCGTC GAGGGCCTGG TGGAGCGCGG CACGCTGCCG
CGCATCAAGC TCGACGAAGC GCGCACCGCG CTCAACGTCG CCGAGAACGG ACTACGCGCC
CGCACCGCCG AGCGCGCCGT GGTGCAGCAG CAATTCAACG AAGGCCAGGT GCTGGCGCCG
GCCGATGGTC GGGTGCTGAA AAAGTTGGTG GCGGTGGGCT CGGTGATGCT GCCGGGCGAC
GCGGTGGCGA CCATCGCGCA GCAGGATTTC AAATTGCGGC TGCGGATTCC GGAGCATCAC
GCCCGCTCGC TGAGACTCGG CGACAAGGTC CGCGTCGACG GCGGCGAGAT CGGCGCGGCC
GCGCCACGGT TCGGCACCAT CGATCTGATC TATCCGCAGA TCGAGGACGG CCGCGTGGTC
GCCGACGCCA AAGTCGACGG CCTCGGCGAG TATTTCGTCG GCGACCGACT GCGGGTGTGG
ATCGCCGGCG GCGAGCGCAC CGCCTTCGTG ATTCCCTCGA GCTACGTGAC CACGAAGTTC
GGCATCGACT ACGTCAAGAT CGAGCAACCC GGGGGCACCA TCGTCACGCC GGTGCAGCGC
GGCCGCGACC TGCCGAGCCC GGAGCTGCCC GACGGCCTGG AGATTCTGTC GGGGATCGGC
CGCGGCGATC GGTTGGTGCA GCCGTGA
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| Protein sequence | MRGIACGLLA ALLVPSAMLR AEPLTVAART VADDKAVFAT VESVSVVPAR GRIGGTVVQL
KVKEGDAVTR GQAIAAIGDE KLALQMNALD AQIAALQAQS SQAQIDFNRV EGLVERGTLP
RIKLDEARTA LNVAENGLRA RTAERAVVQQ QFNEGQVLAP ADGRVLKKLV AVGSVMLPGD
AVATIAQQDF KLRLRIPEHH ARSLRLGDKV RVDGGEIGAA APRFGTIDLI YPQIEDGRVV
ADAKVDGLGE YFVGDRLRVW IAGGERTAFV IPSSYVTTKF GIDYVKIEQP GGTIVTPVQR
GRDLPSPELP DGLEILSGIG RGDRLVQP
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