| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3196 |
|---|
| Symbol | |
|---|
| ID | 3971994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3536836 |
|---|
| End bp | 3537747 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637926306 |
|---|
| Product | catechol 1,2-dioxygenase |
|---|
| Protein accession | YP_533057 |
|---|
| Protein GI | 90424687 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3485] Protocatechuate 3,4-dioxygenase beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.42127 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.302441 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCACT TCGACGACAG CGAACTCACC GCGGCGGTGG TCGGCAGCTT TGCGGAAGCC
AACGACCCGC GGTTGAAATT CCTCATGGAA GAATTGGTGA CGTCGCTGCA CGGCTTCGTG
CGGCGGACCA ATCTGAGCTT CGAGGAATGG GGCGCCGCGC TGGAGTTTCT GACCCGCACC
GGACAGAAAT GCAGCGCCAC GCGGCAGGAA TTCATCCTGC TCTCGGACGT GCTCGGGGTG
TCGATGCTGG TCGACGCGGT CAACCATCGC GATCGCGGCG GCGCCACCCA GACCACGGTG
CTGGGGCCGT TCTATGTCGG CGAGCACAGG CCGTTGCCGC ATGGCGCGGA TATTTCGGAA
AACGTCGAGG GCGACCGCAT GTTCGTGCAA TGCCGGGTCA CCGACCTTGC CGGCAAGCCG
CTGGCCGGGG TGACGGTCGA TGTCTGGCAC GCCGACGACG AGGGCTTCTA CGATTCGCAG
AAACCGTCCT ATGCCAGCGA CGGCCCGTCG CTGCGGGCGC GCTTCACCAC CGATGCGGGT
GGTCGGCTGT TCTTTCGCAC CATCTTGCCG TGCAGCTATC CGATCCCGAT CGACGGCCCG
GTGGGCGAAT TGATCCTGGC CACAAGGCGG CATCCGATGC GGCCGGCCCA TGTGCACTTC
CTGCTCGACG CCAAGGGCTA TGAGCCGCTG GTCACCCACG TCTTCATCGA GGGCGACAAG
TATCTGGAGT CCGACGTGGT GTTCGGAGTG AAGCAGGAAC TGATCTCGAC CATCGAGTTG
CGCACCGACG CGACGATGCC GGACGGGCTG CCGGCGCCGG GGCCGTGGCA TCTGATGACC
TATGATTTCC GGCTGAAGCC CGGCAAGGGC GTGGCGCCGA AGCCGATGAT CGCGGTCAGC
GTCGATGCCT GA
|
|---|
| Protein sequence | MPHFDDSELT AAVVGSFAEA NDPRLKFLME ELVTSLHGFV RRTNLSFEEW GAALEFLTRT
GQKCSATRQE FILLSDVLGV SMLVDAVNHR DRGGATQTTV LGPFYVGEHR PLPHGADISE
NVEGDRMFVQ CRVTDLAGKP LAGVTVDVWH ADDEGFYDSQ KPSYASDGPS LRARFTTDAG
GRLFFRTILP CSYPIPIDGP VGELILATRR HPMRPAHVHF LLDAKGYEPL VTHVFIEGDK
YLESDVVFGV KQELISTIEL RTDATMPDGL PAPGPWHLMT YDFRLKPGKG VAPKPMIAVS
VDA
|
|---|
| |