| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3048 |
|---|
| Symbol | |
|---|
| ID | 3973366 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 3378152 |
|---|
| End bp | 3378715 |
|---|
| Gene Length | 564 bp |
|---|
| Protein Length | 187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637926158 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_532911 |
|---|
| Protein GI | 90424541 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG5340] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.799621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGGC TGAAAGATTT TGCCGCCAAT GGCATTGGTG CGGAAACGCT GGCGCGTCTT
GTCCGGGACG GGTCGGTCAT TCGCCCCGCG CGCGGCCTTT ATCAACTCGC GGATGGCTCG
GGCGATGCGG CGCGTATCCT TGCGGAAGCG TCGGTGCTCG TTCCGAGAGG TGTCATCTGC
CTGACCTCGG CGCTGCAATT CCATGAGCTG ACGCTGCAAA TGCCGTCGAC CGTTTGGATG
GCCATCGATC GCGCCGCTTG GCGTCCCAAG ATCGACTATC CTCCCATCCG CTTTGTGCGC
TTCACCGGCT CCTCTCTGAC AGAAGGTGTC GAGCGGCACT CCATCGATGG CATCGAGGTG
GCAATCACAA ATCCAGCACG ATCGATCGTT GATTGCTTCC GCTATCGAGC GAAGGTCGGT
CTGGATGTCG CTCTAGAAGG TCTACGTGAG GGGCTTCGAC AGCGGAAAGT CACGAGCGAC
CAGCTCTGGG CTTATGGGAC GACGGGAAAG GTCTGGTCGA CCTTGAGGTC CTATGTGGAG
GCGATGGTGG CGGCTGACGC GTGA
|
|---|
| Protein sequence | MMRLKDFAAN GIGAETLARL VRDGSVIRPA RGLYQLADGS GDAARILAEA SVLVPRGVIC
LTSALQFHEL TLQMPSTVWM AIDRAAWRPK IDYPPIRFVR FTGSSLTEGV ERHSIDGIEV
AITNPARSIV DCFRYRAKVG LDVALEGLRE GLRQRKVTSD QLWAYGTTGK VWSTLRSYVE
AMVAADA
|
|---|
| |