| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3020 |
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| Symbol | |
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| ID | 3973627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3316463 |
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| End bp | 3317701 |
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| Gene Length | 1239 bp |
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| Protein Length | 412 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637926131 |
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| Product | putative urea/short-chain amide transport system substrate-binding protein |
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| Protein accession | YP_532884 |
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| Protein GI | 90424514 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | [TIGR03669] urea ABC transporter, substrate-binding protein, archaeal type |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.692302 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGAA CTGTAGTTCG GGGACTGCAT GCCGCAGTCC TCGCGGGGAC GCTTGTCCTC
GCCTCAAATA TGGCCTTCGC GGAGACGCCG ATCAAGCTCG GCGTGCTGGA AGATCAATCC
GGCGACTTCG CGGTGGCAAC GATCGGAAAG GTGCACGCGA TTCAGCTCGC CGCGGAGGAG
ATCAACAAGT CCGGCGGCAT CATGGGCCGT CCGCTCGAAC TGGTGATCTA CGACACGCAG
TCGGACAATA CGCGCTACCA GGAATTCATG CGGCGCGTGC TGCAGCGCGA CAAGGCCGAC
GTGGTGTTCG CGGGATTCTC CTCGGCATCG CGCGAAGCCT ATCGCCCGAT CGTCGATCAG
CTCAACGGCT TTGCCTTCTA CAACAACCAG TATGAGGGTG GCGTCTGCGA CGGACATATG
ATCGTCACCG GCGCGGTCCC GGAGCAGCAA TTCTCGACGC TGATCCCCTA CATGATGCAG
GCCTACGGCA AGAAGGTCTA CACGCTCGCC GCCGACTATA ATTTCGGTCA AATCTCGGCC
GAGTGGGTCC GCAAAATCGT CAAGGAAAAC GGCGGCGAAA TGGTCGGCGA GGAATTCATC
CCGCTCGGCG TCTCGCAATT TTCGCAGAGC ATCCAGAATA TCCAGAAAGC CAAGCCGGAT
TTCGTGGTGA CGCTGCTGGT AGGCACCGCG CAAGCCTCGT ACTACGAGCA GGCGGCCTCG
GCCAACGTCA ACCTGCCGAT GGCGTCGTCG GTCAATGTCG GCCAGGGCTA CGAGCACAAG
CGCTTCAAGG CGCCAAGCCT GAAGGACATG TACGTCACCA CCAACTACAT CGAGGAGATC
GACTCCCCGA CGGCCAAGGC GTTCCTGGCA AAGTTCAAGG CCAAATTCCC CAACGAGCCC
TATGTCAATC AAGAAGCCGA GAACTCCTAT CTCGCGGTCT ATCTGTACAA GCAAATGGTC
GAGCGGGCGA AGTCGACCAA GCGCGACGAC ATCCGCAAGG TGATCGCGCA AGGCGACGTC
TGCATGGACG CGCCTGAAGG CAAGGTCTGC ATCGACCCGA AGAGCCAACA CATGTCGCAC
ACCATCTATC TGGCCAAGGT CGGCGCCGAT CATTCCATCA CCTTTCCGAA GGTCTGGGAG
GGCATCAAGC CGTATTGGCT CGGCGACGCC GGGTGCGACC TGACCAAGAA GGATCCGACG
GCGCAGTACA CGCCGTCGAA TCCGCCGCCG AAGCCGTAA
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| Protein sequence | MNRTVVRGLH AAVLAGTLVL ASNMAFAETP IKLGVLEDQS GDFAVATIGK VHAIQLAAEE
INKSGGIMGR PLELVIYDTQ SDNTRYQEFM RRVLQRDKAD VVFAGFSSAS REAYRPIVDQ
LNGFAFYNNQ YEGGVCDGHM IVTGAVPEQQ FSTLIPYMMQ AYGKKVYTLA ADYNFGQISA
EWVRKIVKEN GGEMVGEEFI PLGVSQFSQS IQNIQKAKPD FVVTLLVGTA QASYYEQAAS
ANVNLPMASS VNVGQGYEHK RFKAPSLKDM YVTTNYIEEI DSPTAKAFLA KFKAKFPNEP
YVNQEAENSY LAVYLYKQMV ERAKSTKRDD IRKVIAQGDV CMDAPEGKVC IDPKSQHMSH
TIYLAKVGAD HSITFPKVWE GIKPYWLGDA GCDLTKKDPT AQYTPSNPPP KP
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