| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2983 |
|---|
| Symbol | |
|---|
| ID | 3969905 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 3264025 |
|---|
| End bp | 3264900 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637926094 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_532847 |
|---|
| Protein GI | 90424477 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.888321 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.289512 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAA GCCCTGAGGG ACAACGAACC GCCTTGGTCA CTGGCGCCAA CTCGGGCCTT
GGCAAGGCGA TCTCCACGGC GCTGGCGGCC GAGGGCATTC GCGTTGGCCT GGTGGTCCGC
GACCGCGCGC GGGGCGAAAA GGCGTTACAA GACATCCGCG CCGCCACGGG CAACGAAGAT
CTGCATCTGT TCGTCGCCGA TCTGGCCGAT CAATCTGCGA TCCGCGCGCT GGCGCAGGCG
GTTCACCAGC GCCTCGGCCG CCTGGAGCTG CTGGTGAACA ATGCCGGCAC CGCCTTCCCG
GAACGGCGGC TCAGCCCGGA CGGAATCGAG TGCGCGCTGG CGGTGAACCA TCTCGGCCCG
TTTCTCCTCA CCACCCTGCT GCTGGATCTG CTCAAAGCCA GCGCGCCGGC GCGGATCGTC
AACGTCGGCA CCCGCATCAC CACGGCGATG GAGTTCGAGG ATTTGAATTG GGAGCGGCGG
CCCTACAGCA TGATGAAGGG CTACGGCCAA TCCAAGCTCG GCAATCTGCA CTTCACCTTC
GAACTGGCGC GCCGGCTTGA GGGCTCCGGC GTGACGGTGA ATTGCGTATT CCCCGGCGTC
TTCAAATCGA ATCTGGGCGG CACCGATGGC GCCCAAGGCG TGTTGTTGAA GCTGTTTGCC
CGGCTGCTGG GCTGGGCGAT CCCTTCGCCC GAGAAGGCGG CGCGGCGCGT GCTCTATCTC
GCCAACGCCC CCGAATTGGC GAACGTCAGT GGTCGGTATT TTGGCGATCG CAAGACCATC
CCGGCGCCCG CACAGACGCT CGACCCGCAA GCCAACCGAC GGCTGTGGCA GATCAGCGAG
GCGCTGACGG CCGAACCGGC GGTGGCGGGC AGCTGA
|
|---|
| Protein sequence | MSTSPEGQRT ALVTGANSGL GKAISTALAA EGIRVGLVVR DRARGEKALQ DIRAATGNED
LHLFVADLAD QSAIRALAQA VHQRLGRLEL LVNNAGTAFP ERRLSPDGIE CALAVNHLGP
FLLTTLLLDL LKASAPARIV NVGTRITTAM EFEDLNWERR PYSMMKGYGQ SKLGNLHFTF
ELARRLEGSG VTVNCVFPGV FKSNLGGTDG AQGVLLKLFA RLLGWAIPSP EKAARRVLYL
ANAPELANVS GRYFGDRKTI PAPAQTLDPQ ANRRLWQISE ALTAEPAVAG S
|
|---|
| |