| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2890 |
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| Symbol | |
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| ID | 3970040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 3142869 |
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| End bp | 3145112 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637926002 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_532757 |
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| Protein GI | 90424387 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00446727 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0355503 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCATGATC ATGCCTCACG AACCGCCGGG CTGCCGGCCA CCTCGTCGCT GACGCTGCGA
AGTTCCAGCG TCGCGCTGGC GTTGGTGATT GGGCTTGGCG CCTCGCTCGA TGCCTTCGCG
GCATCGCAGG TTCCGCTGCC CAAGCCGCGG CCGCTGGCCC GCGGCGTGGT GCCGAAAACG
ACTCCCGCCA CGGCGGCGCC AGCGCCGATC CGCGGCTCGC TATCGGTTGC GGCCTCGCCG
GCGCGGGCGC TGGAACCCGC AACCCGGAAG CACGCCGCGC TGCCGGCCAA ACCGGAGCGC
AAACCCACGG CACCGGCGGC GATGGCCGCG ACCTCGTCGA CGCCGCAGGC CGACGTCGAA
GCGGTCGAGA CCGTGATCGA GCTGATCCGC AACCACAAAC CCGCCGACGC CACTCAGGTG
GCGGCGGGCA TTTCGGATTC GGTGGCACGC AAGCTCGCCG AATGGCTGAT CCTGCGCAGC
GACGACAACG GCGCCGCGGT CGAGCGCTAC CGCGCCTTCC TCGCCGCCAA TCCGAGCTGG
CCGTCGCAGA CCTTCCTGCG CCGGCGCGCC GAGGCAGCGT TGTGGGACGA CCATCGCGAC
GATGGCGTCG TGCTCAGCTA TTTTCAGAAC GAAACGCCGT TGTCGGCGAA GGGCCGGCTG
TCGCTGGCGC GCGCTTTGTT GGCGCGCGGC GATCGCCGCG AAGCCGAGCG CCTGGTCCGC
GAGTCCTGGC GCGGCGACCA GATGACCGAA GCGCTGGAGA CCATGGCGCT CGAAATGTTC
GCGCCGCTGC TGACCCCCGG CGATCACAAG GCGCGGATGG ACGTCTTGCT TTACGAACGC
GACAGCGCCG CCGGATTGCG CGCCGCCAAG CGGCTCGGCA CCGCGCAGCT GGCGCTCGCC
AAAGCCCGAA TCGCACTGGC GCGCAAGGCG CCGAACAGCA AGGCGCTGCT CGAAGAGGTG
CCGAGAGAAC TACACGGCGA CCCCGGCTAT ATCCTGGCCA AGATCCAGCT GCTGCGCCGC
GAGGACAAGT TCACCGAGGC CGCGCATCTG ATGCTGAATG CGCCGCGCGA TCCGGCCCGA
CTCTACGACC TCGACGAATG GTGGATCGAG CGACGACTGT TGTCGCGCAA GATGCTCGAC
GTCGGCGAGC ACCGCTCCGC CTATCTGATC GCGCGCGACG CCGCGCTGCC GTCGCGCGAC
ATCTACAAGA CCGAGCAGGA ATTCACCGCC GGCTGGATCG CGCTGCGGTT CCTCAAGGAC
CCGGCCACCG CCGCGCAGCA CTTCGCCCGG ATCGGCGTCG GCAGCGTCAA CCCGACGGCG
CTGGCGCGGG CCGGCTATTG GCAGGGCCGC GCCGCCGAGG CCGCCGGCCG CAGCCAGGAG
GCGCGCAACG CCTATGCGGC GGCCGCCGAG CAATCCACCA GCTATTACGG CCAATTGGCG
CGCGCCAAAT TGGGGCTGCC GCAGATCGAG CTGAACGCCG CGCCGGCCAG TCGAACCCGC
GGCGTCGAAC GGCTGGAGGT CGTTCGCGCG GTGGCCCTGC TCTACGCGCT CGACGAGCGC
GACATCGCGA TTCCAATCTT CGGCGACATC GGCGAGAACG GCGATCCCGA CGCGCTGGTC
GGCCTCGCCG AACTCGCCTC GCGCAACGGC GACGCCCGCG GCATGTTGCT GCTCGGCAAG
GCCGCGCTGA ACCGCGGCCT GCCGTTCGAG CACTACGCCT ACCCGGTCAA CGGCATTCCG
CCGTTCAAAT CGATCGGCCC CGACGTCGAC CGCGCCGTGG TCTATGCGAT CGCCCGGCAG
GAAAGCGCGT TCAATCCCGC GGTGGTGTCA CCGGCCAACG CCTACGGCCT GATGCAGGTG
ACGCCGGGCG CCGCCAAATA TGTCTGCAAG AGATATGGCG CGAGCTTCGA TCTCGCCCGG
CTGAAAAACG ACTCGGCGTA CAACGCCACG CTCGGCGCCG CCGAGCTCGG CAGCCTGATC
GACGACTATC GCGGCTCCTA CATCATGACT TTTGCCGGCT ACAATGCCGG GCGTGGCAGC
GTGCGGAAAT GGATCGAGCG CTACGGCGAT CCGCGCGATC CGCAGGTCGA CGCGGTCGAC
TGGGTCGAGC AGATCCCGTT CGCCGAGACC CGCAACTACG TGCAGCGGAT CATGGAAAAC
CTCCAGGTCT ATCGCGCCCG CTTCGGCGGC GGCACGAAGC TGCAGATCGA AGCCGACCTG
CATCGCGGCG CCAGCGTCGA ATAA
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| Protein sequence | MHDHASRTAG LPATSSLTLR SSSVALALVI GLGASLDAFA ASQVPLPKPR PLARGVVPKT
TPATAAPAPI RGSLSVAASP ARALEPATRK HAALPAKPER KPTAPAAMAA TSSTPQADVE
AVETVIELIR NHKPADATQV AAGISDSVAR KLAEWLILRS DDNGAAVERY RAFLAANPSW
PSQTFLRRRA EAALWDDHRD DGVVLSYFQN ETPLSAKGRL SLARALLARG DRREAERLVR
ESWRGDQMTE ALETMALEMF APLLTPGDHK ARMDVLLYER DSAAGLRAAK RLGTAQLALA
KARIALARKA PNSKALLEEV PRELHGDPGY ILAKIQLLRR EDKFTEAAHL MLNAPRDPAR
LYDLDEWWIE RRLLSRKMLD VGEHRSAYLI ARDAALPSRD IYKTEQEFTA GWIALRFLKD
PATAAQHFAR IGVGSVNPTA LARAGYWQGR AAEAAGRSQE ARNAYAAAAE QSTSYYGQLA
RAKLGLPQIE LNAAPASRTR GVERLEVVRA VALLYALDER DIAIPIFGDI GENGDPDALV
GLAELASRNG DARGMLLLGK AALNRGLPFE HYAYPVNGIP PFKSIGPDVD RAVVYAIARQ
ESAFNPAVVS PANAYGLMQV TPGAAKYVCK RYGASFDLAR LKNDSAYNAT LGAAELGSLI
DDYRGSYIMT FAGYNAGRGS VRKWIERYGD PRDPQVDAVD WVEQIPFAET RNYVQRIMEN
LQVYRARFGG GTKLQIEADL HRGASVE
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