| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2576 |
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| Symbol | |
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| ID | 3970915 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2796921 |
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| End bp | 2797991 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637925686 |
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| Product | dihydrouridine synthase TIM-barrel protein NifR3 |
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| Protein accession | YP_532445 |
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| Protein GI | 90424075 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.04538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.387025 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTTGCGAT CGCCGAACCA CGAGAAGGCT GTGACCGCCT CTCCTTTAAC ATGTCCTCGC
GCGCTGCAAA TTGGCGTTGT TGAGGTGGTG AACAGGGCGT TCCTGGCCCC TATGTCCGGC
ATCACCGATG CGCCGTTCCG GCGGCTCACC GCGGCGCTCG GCGCCGGCCT GGTGGTATCG
GAAATGACCG CCAGCGACGA TCTGGCGCGC GGCCGGCCGA TGTCGGTGCG GCGTTGCGAT
ACCGCGGGGA TCGGGCCGCA TGTGGTGCAG CTCGCCGGCT GCCAGGCGCG CTGGATGGCG
GAGGGCGCGC GGATTGCGGA AGCCGGCGGC GCCGACCTGA TCGATATCAA CATGGGCTGT
CCGGCCCGCC ACGTCACCGG CGGCAGCGGG CAGTCCGGCT CGGCCTTGAT GCGCGACCTC
GACCACGCGC TGACGCTGAT CGAAGCCACG GTCGGCGCGG TGCGGGTGCC GGTGACCCTG
AAAATGCGGC TCGGCTGGGA TCGCGATTGC CTTAACGCGC CGGAATTGGC GCGCCGCGCC
GAGGCCGCCG GCGTGCAGCT GATCACCGTG CACGGCCGCA CCCGCAATCA GTTCTACAAG
GGCACGGCGG ATTGGGCCGC GGTGCGCGCA GTGCGCGAGG CGACCTCGCT GCCGCTGGTG
GTCAACGGCG ATATCACCTC GGTCGAAGCC GCGCGCGAAG CGCTGCGGCA GTCCGGCGCC
GATGCGGTGA TGATCGGCCG CGGCGCGCAG GGCCAGCCCT GGCTGCCGGG GCAGATCGGC
CGGCAATTGC AGACCGGCAT CGCCGAAGCG CCGCCGTCGC TCGCCGAACA GCTGAGCTAT
CTGCAGACGC TGTATGACGA ACTGTTGGAG CTTTACGGCC TGCACGTCGG CTTGCGTCAC
GCCCGCAAGC ATCTCGGCTG GTCGCTCGAA GTCGCCGCCA GCGCAACCGA CGCCGAGCCC
GCGACGCTGA AATCCTGGCG CGAACGGATC CTGCGGTCGG AGGATCCCGC CGCGGTCCGT
CGCGCGCTGG TCGAGGCGTT TGACGATTTT GCCTGGAGGG CCGCCGCATG A
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| Protein sequence | MLRSPNHEKA VTASPLTCPR ALQIGVVEVV NRAFLAPMSG ITDAPFRRLT AALGAGLVVS
EMTASDDLAR GRPMSVRRCD TAGIGPHVVQ LAGCQARWMA EGARIAEAGG ADLIDINMGC
PARHVTGGSG QSGSALMRDL DHALTLIEAT VGAVRVPVTL KMRLGWDRDC LNAPELARRA
EAAGVQLITV HGRTRNQFYK GTADWAAVRA VREATSLPLV VNGDITSVEA AREALRQSGA
DAVMIGRGAQ GQPWLPGQIG RQLQTGIAEA PPSLAEQLSY LQTLYDELLE LYGLHVGLRH
ARKHLGWSLE VAASATDAEP ATLKSWRERI LRSEDPAAVR RALVEAFDDF AWRAAA
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