| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2289 |
|---|
| Symbol | |
|---|
| ID | 3973730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 2488189 |
|---|
| End bp | 2489412 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637925397 |
|---|
| Product | alanine racemase |
|---|
| Protein accession | YP_532162 |
|---|
| Protein GI | 90423792 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0787] Alanine racemase |
|---|
| TIGRFAM ID | [TIGR00492] alanine racemase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.637547 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGTCG TCCCCAGTCC GAAGTCGATC GCCCCTGAGT CATCACGCGC GGCAGAATCC
GCACGCCCGG CGGCGCTGGC CGCCGCCACC GGGGTGCTCA GCATCGACCT CGACGCCATC
GTGGCGAACT GGCGCAAGCT GGAAAAGACC GCGGTGCCTT CGGAATGCGC CGGCGTGGTG
AAGGCCGACG CCTATGGCTG CGGGGCCGGC CCGGTGGCGC GCGCGCTATT GGCCGCCGGC
TGCAAGACCT TTTTCGTCGC CACGCTCGAT GAAGCCCGCG AGCTGCGCGC TGCGGCGCCC
GCGGCCGTCG TCTATGTGCT CGACGGCTTC CTGCCGAACT GCGGCGACGC CTATGCCGAA
CTCGACTGCC AGCCGGTGAT CGGCAGCCTC GACGAACTCG CCGAATGGGA TTCGTTCTGC
CGCCGCAGCT TCTGGAAGGG CGGCGCCGCG ATCCATATCG ACACCGGCAT GAACCGGCTC
GGGCTCGGCA TCGCCGAGGC CGAAGGCATC GTGCCCAGGA TCACCGCGGG CGATCACGGC
ATCACCCTGG TGCTCAGCCA TCTGGCCTGC GCCGAGACCC TGAACCACCC GCTCAACGCC
AAACAGGCGA GCCATTTCCG CGGCATCGCC AGCGCGTTTT CCGGGGTGCC GGCGTCGCTG
TCGGCGTCGT CGGGGATCTA TCTCGGCCAG CAATTCCACT TCGACCTGGT GCGGCCGGGC
GCGGCTTTGT ACGGCATCAA CCCGACGCCG GAGGCCGACA ATCCGATGCA GCCGGTGGTG
ACGTTGCAGT CGCGGATCCT GCAGGTGCGC GAGGTCGCGC GCGGCGACAC CGTGGGGTAC
GGCGCGACCT GGACGGCGCG GCGGCCGACA AGGATCGCGG TGGTCGCGGC CGGCTACGCC
GACGGCTATT TCCGCGCCGC CGGCTCCAGC GACGGCACCC GCGGCGCCGA CGTGATCATT
GCCGGGCAGC GCTGCCCGGT GGCCGGGCGG ATCTCGATGG ATCTTTTGGC GGTCGACGTC
ACCGATCTGC CGCCGAACGC CGCGCGGCGC GGCCACATGG CGACGCTGAT CGGCGACGGC
ATCACCGTCG ACGAGCTGGC GCATCATTTC GGCACCATCG GCTACGAGGT GCTGACCAGC
CTCGGCAAAC GCTACGCGCG GCAGTACAAG ACGGCGCGGG CAGACCCCGC TGACCTCCCT
GCCGCCGCGC CGGAGGCGAA ATAG
|
|---|
| Protein sequence | MNVVPSPKSI APESSRAAES ARPAALAAAT GVLSIDLDAI VANWRKLEKT AVPSECAGVV
KADAYGCGAG PVARALLAAG CKTFFVATLD EARELRAAAP AAVVYVLDGF LPNCGDAYAE
LDCQPVIGSL DELAEWDSFC RRSFWKGGAA IHIDTGMNRL GLGIAEAEGI VPRITAGDHG
ITLVLSHLAC AETLNHPLNA KQASHFRGIA SAFSGVPASL SASSGIYLGQ QFHFDLVRPG
AALYGINPTP EADNPMQPVV TLQSRILQVR EVARGDTVGY GATWTARRPT RIAVVAAGYA
DGYFRAAGSS DGTRGADVII AGQRCPVAGR ISMDLLAVDV TDLPPNAARR GHMATLIGDG
ITVDELAHHF GTIGYEVLTS LGKRYARQYK TARADPADLP AAAPEAK
|
|---|
| |