| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2227 |
|---|
| Symbol | |
|---|
| ID | 3973225 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2427731 |
|---|
| End bp | 2429425 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637925335 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_532100 |
|---|
| Protein GI | 90423730 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | [TIGR03205] dicarboxylate--CoA ligase PimA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.08014 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.204171 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCCCA TGACCCATCC CGGCGAACAG TTCTATCCCG CGGGCCTCAC CTGGGACGCG
CCGGTTGCGC GCGGCACGCT GCCCGATCTG CTATCAACCT CGGCTACCCG CTACGGCGCG
CGGCCGGCGA TCGAGTTTCG CGACCGCGCG ATCAGCTTCA CCGAGTTGGA AGCGCTGGTC
GAAACCGCGG CGGCGGCGTT GCTGCGCGCC GGCTATGGCA AGGACTGTTC GGTCGGGCTG
TATCTCGGCA ATCTGCCGGA TCATCCGATC AATTTCTTCG GCGCGCTGAA GGCCGGCGCC
CGCGTCGTGC ATCTGTCGCC GCTCGACGGC GAGCGCGCGC TGTCGCACAA GCTCAGCGAT
TCCGGCGCGC GGATCCTGAT CACCAGCGAT CTCGCCGGGC TGCTGCCGAT GGCGCTGAAA
TTTCTGGAGA AGGGGCTGCT CGACCGGCTG ATCGTCTGCG ACGACGAGCA TTGGGGCGCG
GTCGGCAATC CGCACACCCC GATCCCCGAC GATCCGCGCA TCGTCCGCTA CGCCGATTTC
ACCAAAGATG CGACGCCGCC GGCGCAATGG CCGGCGCTTA AGCCCGACGA CGTCGCCGTG
CTGCAATACA CCGGCGGCAC CACGGGCTTG CCGAAAGGCG CGATGCTGAG CCACGGCAAT
CTGACATCGG CAGTGTCGAT CTACGATCTG TGGGGTGCCA GGGACCGCGC CGAACGCAAC
ACGGTGGAAC GGGTGATCTG CGTGCTGCCG CTGTTCCACA TCTACGCGCT CACCGTGATC
CTGTTGCGCT CGCTCAATAA CGGCGACCTG ATCTCGCTGC ATCAGCGCTT CGACGTCGCG
GCGATCTTCC GCGACATCGA AGAGAAGCGC GCCACGGTGT TTCCCGGGGT GCCGACGATG
TGGATCGCGC TGGCCAACGA TCCGTCGTTG GAGAGCCGCG ACCTGTCGTC GCTGGCGACT
TGCGGCTCCG GCGGCGCGCC GCTGCCGGTC GAGGTCGCCA AAGTGTTCGA GCGCAAGACC
GGGCTGCAAT TGAAGAGCGG CTGGGGCATG ACCGAAACCT GCTCGCCCGG CACCTCGCAT
CCGCTCGAAG GCCCGGACAA GCCGGGCTCG ATCGGGCTGA TGCTGCCCGG CATCGAGCTC
GACGTGGTGT CGCTCGATGA TACTTCGAAG CCGCTGCCGC CGGGCGAAGT CGGCGAGCTG
CGGATCCGCG GCCCCAACGT CACGCGCGGT TACTGGAACC GGGCGCAGGA GACCGCCGAA
GCCTTCGTCG GCGACCGCTT TCTCACCGGC GATATCGGCA CCATGGACCG CGACGGTTAC
TTCTTTCTGG TCGACCGCAA GAAGGACATG ATCATCTGCG GCGGCTTCAA CGTCTATCCG
CAGATGATCG AGCAGGCGAT CTATGAACAC CCGAGCGTGC AGGAAGTGAT CGTGATCGGC
ATTCCCGATC AATATCGCGG CGAGGCGGCC AAGGCCTTCG TCAAGCTGCG TAGCGGCGCC
GCGCCGTTCA GCGTCGACGC GCTGCGGGAA TTTCTTAAAG GCAAGCTCGG CAAGCACGAA
CTGCCGGCGG CGCTGGAATT GGTCGACGAA TTGCCGCGCA CCAGCGTCGG CAAATTGTCG
CGCCACGAGT TGCGCGCCAA GCAACCCAAC CACCAAACTC AACAACAACA AATCACAACA
GGAGGTCGCC CATGA
|
|---|
| Protein sequence | MSPMTHPGEQ FYPAGLTWDA PVARGTLPDL LSTSATRYGA RPAIEFRDRA ISFTELEALV
ETAAAALLRA GYGKDCSVGL YLGNLPDHPI NFFGALKAGA RVVHLSPLDG ERALSHKLSD
SGARILITSD LAGLLPMALK FLEKGLLDRL IVCDDEHWGA VGNPHTPIPD DPRIVRYADF
TKDATPPAQW PALKPDDVAV LQYTGGTTGL PKGAMLSHGN LTSAVSIYDL WGARDRAERN
TVERVICVLP LFHIYALTVI LLRSLNNGDL ISLHQRFDVA AIFRDIEEKR ATVFPGVPTM
WIALANDPSL ESRDLSSLAT CGSGGAPLPV EVAKVFERKT GLQLKSGWGM TETCSPGTSH
PLEGPDKPGS IGLMLPGIEL DVVSLDDTSK PLPPGEVGEL RIRGPNVTRG YWNRAQETAE
AFVGDRFLTG DIGTMDRDGY FFLVDRKKDM IICGGFNVYP QMIEQAIYEH PSVQEVIVIG
IPDQYRGEAA KAFVKLRSGA APFSVDALRE FLKGKLGKHE LPAALELVDE LPRTSVGKLS
RHELRAKQPN HQTQQQQITT GGRP
|
|---|
| |