| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_2003 |
|---|
| Symbol | |
|---|
| ID | 3973866 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 2179174 |
|---|
| End bp | 2179836 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637925113 |
|---|
| Product | 3-oxoacid CoA-transferase, subunit A |
|---|
| Protein accession | YP_531878 |
|---|
| Protein GI | 90423508 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.881736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAAAG TCATCGCGTT ATCCGATGCG GTCGAACGCA TTCCGGAAGG CGCCGTGCTG
ATGATCGGCG GCTTCACCGG CATCGGCGCG CCGCTGCGGC TGATCGACGA GTTGGTGCGG
CAGCGCAAGA GTGAGCTGAC CATCATCACC AACGACACCG GGCGGCCCAA TGTTGGCATC
GGGAAGCTGG TCAGCGAGCG ACTTGTCTCG CGTGTCATCG CCAGCCACAT CGGCCTCAAC
CCGGACACCC AGAAGCAGAT GATCGCCGGC GAGATCGAGG TCGAACTGGT GCCGCAGGGA
ACGCTGGCCG AACGCATCCG CGCCGGCGGC TTTGGCCTCG GCGGCATCCT CACCCTCACC
GGCCTCGGCA CCTTGGTCGA GGAGGGCAAG GCGACCGTCG ATGTCGACGG CCAGACCTTC
CTGCTGGAAA GGCCGCTCAG GGCCGATTTC GCCCTCGTCG CGGCCAAGCG TGCGGACTAC
GGCGGCAACC TCGAATACGC GTTCACCGCG CGTAACTTCA ACCCGCTGAT GGCGATGGCG
GCCACGACCG TCATCGCCGA GGCCGATGAG ATCGTGCCGG TCGGGGTTAT CTCGCCCGAC
GCGGTCGTCA CGCCGAACGT CGTCGTGGAC CACCTGGTAG CCAAGGAGCG TCGTCATGGA
TGA
|
|---|
| Protein sequence | MRKVIALSDA VERIPEGAVL MIGGFTGIGA PLRLIDELVR QRKSELTIIT NDTGRPNVGI
GKLVSERLVS RVIASHIGLN PDTQKQMIAG EIEVELVPQG TLAERIRAGG FGLGGILTLT
GLGTLVEEGK ATVDVDGQTF LLERPLRADF ALVAAKRADY GGNLEYAFTA RNFNPLMAMA
ATTVIAEADE IVPVGVISPD AVVTPNVVVD HLVAKERRHG
|
|---|
| |