| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1870 |
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| Symbol | |
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| ID | 3973387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 2035492 |
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| End bp | 2036778 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924981 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_531746 |
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| Protein GI | 90423376 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCCAAC TTATCTCAAC GTGCCGGCGT GCCCCGCACT GGCGCGCCGC GGCCGGCGCC
AGCCTGTTGC TGGGTTTGAT GCTCACCGGA TGCGGCGGGC AGGAGCAGGG GGCGGCGCAG
AAGGCCGCTC CGCCGCGGCC GGAGGTCAGC GTGGTGACGC TGCATCCGCA ATCGGTGGCG
ATCACCACGG AGCTGTCGGG GCGCACCACG GCGTCATTGA CGGCCGAAGT GCGGCCGCAG
GTCAACGGCA TCATCCAGTC GCGACTGTTC CAGGAAGGCA GCGAAGTGGC GGCGGGCGCG
GCGCTGTATC AGATCGATCC GGCGAGCTAT CAGGCGGCGT ATGACAGCGC CGTGGCGGCG
CAGCAGAAGG CCGAGGCGTC GGTGCCGAGC GCCGCCGCCA AGGTCGAGCG CTATCAGGGC
CTGGTCAAGC AGAACGCGGT CAGCAAGCAG GATTATGACG ACGCGGTGGC GACGCTGGCA
CAGACCAAGG CCGACGTTGC CTCCGCCAAG GCCAGCGTCG AGACCGCCCG CATCAACCTG
GACTACACCA AGATCGTGGC GCCGATCGGC GGCCGCATCG ACAAGTCGTC GCTCACTCCC
GGCGCGCTGG TGACGGCGAG CCAGACCACC GCGCTGACCA CGATCCGCAA GCTCGATCCG
ATCAATGTCG ACGTCACCGA ATCCAGCACC AATCTGTTGA ACTGGCGGCA AGCGGTCAAA
GAAGGTCGGA TCAAATACAC CGGCCCCGAC GTCAGCATCA AACTGAAGCT CGACAACGGC
ACGATCTACG CGCAGACCGG CAAGCTGGCG TTCTTCGAAT CCAACGTCAG CGAGACCACC
GGCACCTTCG CCTTGCGTGC CGAGTTTCCC AATCCCGACC GTCTGCTGTT GCCCGGCATG
TATGTGCGCG CGCTGATCGA GGAGGGCGTC GCCGACAACA GCTTCGTGGT GCCGCAACGC
GGCGTCACCC GCAACACCAA GGGCGAAGCC ACCGCGCTGA TCGTCACCGC CGAGGGCAAA
GTCGAGCAGC GGGTGCTGAC GGTCGGCAAA AGCGTCGGCA ACAACTGGCT GGCCAGTGCC
GGCGTCAAGG ACGGCGATCG CGTCATCGTC GAGGGCACCC AACTGGTGCG GCCGGGGCAG
GACGTCACCG CCGTCGAAGT CACCATCGAC GAGAACACCG GCGAGGTGCG GGCTCACAAG
CAGGGCTCGT TGTCGCCATC CGCGCCGCTG CGGTTCGCGG GCGGCGACGA TGAGCCGAAC
GGCGTCGCCG CGGTCGGAAG CCGCTGA
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| Protein sequence | MIQLISTCRR APHWRAAAGA SLLLGLMLTG CGGQEQGAAQ KAAPPRPEVS VVTLHPQSVA
ITTELSGRTT ASLTAEVRPQ VNGIIQSRLF QEGSEVAAGA ALYQIDPASY QAAYDSAVAA
QQKAEASVPS AAAKVERYQG LVKQNAVSKQ DYDDAVATLA QTKADVASAK ASVETARINL
DYTKIVAPIG GRIDKSSLTP GALVTASQTT ALTTIRKLDP INVDVTESST NLLNWRQAVK
EGRIKYTGPD VSIKLKLDNG TIYAQTGKLA FFESNVSETT GTFALRAEFP NPDRLLLPGM
YVRALIEEGV ADNSFVVPQR GVTRNTKGEA TALIVTAEGK VEQRVLTVGK SVGNNWLASA
GVKDGDRVIV EGTQLVRPGQ DVTAVEVTID ENTGEVRAHK QGSLSPSAPL RFAGGDDEPN
GVAAVGSR
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