| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1838 |
|---|
| Symbol | |
|---|
| ID | 3971718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 1993288 |
|---|
| End bp | 1994841 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637924951 |
|---|
| Product | amino acid permease-associated region |
|---|
| Protein accession | YP_531716 |
|---|
| Protein GI | 90423346 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0531] Amino acid transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTGA ACTGTCGTCG CGGCGCTTCT CGTCCGGCAA CTCGGTTTCC AGACAAGCAG
GCGTCGATGG CGGATATTTG GGTTCGTAAG TCACTGAGCG ATCTTCGCGC GGAAGCGGCT
GTCGCCGAGT CGGAGGAGCA CGGCGGCGGC CACCTCAAGC GCTCGCTCTC GGCGTTCAAT
CTCGTTGCGC TCGGGGTCGG CGGCATCGTC GGGGCAGGCA TTTTCGTCCT GACCGGCCAC
GCCGCCGCCG CCAATGCGGG TCCCGCGGTG TTGCTGTCTT TCGTGCTCGG CGCCTTCGCC
TGCGCCTTCG CCGGCCTGTG CTATGCGGAG ATGGCCTCCA CCGTCCCGAT CTCCGGCAGC
GCCTACACCT ACGCCTACGC CACCATCGGC GAACTGCCCG CCTGGATCAT CGGCTGGGAT
CTGATCCTGG AATACGCCGT CGGCGCCGTC ACGGTTGCGA TCGGCTGGTC GGGTTATTTC
GTCAGCCTGC TCGCCAATCT CGGCATCCAT CTGCCGCCGC AACTGACGGC GGCGCCGCTC
GCCTACGACG CGGCGTTGCG GACCTGGTCG ACCACCGGCG CGATCGTCAA CCTGCCTGCG
ATGGCGATCG TCGCGGCGAT CTCCGCGCTG TTGGTGGTCG GCATTCAGGA GTCGGCCCGG
TTCAATACCG TGATCGTGGC GATCAAGCTC ACGGTGATCG CCATTTTCCT GGTCTGCGCC
GCCCCGATGG TCAGCACGGC GAACTGGGTG ACGGCGGGCA ATCCCGAGGG CGCGTTCATT
CCGCCGAATG CCGGCACAGG GATTTTTGGC TGGTCCGGGG TGCTGCGCGG CGCCGCGGTG
GTGTTCTTCG CCTTCATCGG CTTCGACGCC ATTTCGACCA CCGCGCAGGA AGCCAAAAAT
CCGCAGCGCG ACTTGCCGAT CGGCATCCTT GGCTCGCTGG CGATCTGCAC CCTGCTCTAC
GTCGCGGTCG CCTTCGTGCT GACCGGCATC GTGCCGTACG ACCAGCTCAA CGTGCCCGAT
CCGATTGCGG TCGGGATCGA CGCGGCCGGC ATCGGCTGGA TTTCGCCGAT CGTCAAGATC
GGGATCGTGA CCGGATTGAC CTCGGTGATC CTTATTCTGC TGCTTGGCCA GACCCGCGTG
CTGCGCGCGA TGGCGCATGA CGGCTTGATG CCGAAGAGTG CGGCGGCGAC GCATCCGCGG
TTTCACACCC CGCACATCGC CACTATCGTC ATCGGCATTC TCGTCGCCGG GCTGGCGGGC
GTGCTGCCGA TCGGCCTGGT CGGCGAGATG GTCAGCATCG GCACGCTGTT CGCGTTTGCG
GTGGTGTGCG TCGCCGTGCT GGTGATGCGG ATCAGGCATC CGGAGTATCA ACGCCCGTTC
AGAGTGCCGG CGATCTGGCT GGTGGCGCCG GCGGGCGCCG GGGTGTCGTT CGTGCTGATG
CTGGGGCTTC CGCTCGACAC CTGGCTTCGG CTGGGCGCCT GGCTGGCGAT CGGGCTGGCG
ATCTACGCCT TCTACGGCCG CCATCACAGC AAGGCTGCGC AGCGGGTGGA GTAG
|
|---|
| Protein sequence | MELNCRRGAS RPATRFPDKQ ASMADIWVRK SLSDLRAEAA VAESEEHGGG HLKRSLSAFN
LVALGVGGIV GAGIFVLTGH AAAANAGPAV LLSFVLGAFA CAFAGLCYAE MASTVPISGS
AYTYAYATIG ELPAWIIGWD LILEYAVGAV TVAIGWSGYF VSLLANLGIH LPPQLTAAPL
AYDAALRTWS TTGAIVNLPA MAIVAAISAL LVVGIQESAR FNTVIVAIKL TVIAIFLVCA
APMVSTANWV TAGNPEGAFI PPNAGTGIFG WSGVLRGAAV VFFAFIGFDA ISTTAQEAKN
PQRDLPIGIL GSLAICTLLY VAVAFVLTGI VPYDQLNVPD PIAVGIDAAG IGWISPIVKI
GIVTGLTSVI LILLLGQTRV LRAMAHDGLM PKSAAATHPR FHTPHIATIV IGILVAGLAG
VLPIGLVGEM VSIGTLFAFA VVCVAVLVMR IRHPEYQRPF RVPAIWLVAP AGAGVSFVLM
LGLPLDTWLR LGAWLAIGLA IYAFYGRHHS KAAQRVE
|
|---|
| |