| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1794 |
|---|
| Symbol | |
|---|
| ID | 3972059 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1949785 |
|---|
| End bp | 1951362 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637924907 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_531672 |
|---|
| Protein GI | 90423302 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0821089 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACGT CCGAGAGCCA GGGCCGCGAA TCGGCCCAGC AGCGCGCCTT GCCGGCGCCG
ATCGCGCCGC CGGCGGCGCC CGGCGATATC GATGTGGCGA TGATCGCCGC GCCGCCGCTG
GCGCCCGCCG CGCCGCTGAC CCGCGCCGAA GTCCGCGGCA TCCTGCTCAG CCTGTTGCTG
GCGATGTTCC TGGCCGCGCT CGACCAGACC ATCGTCGCCA CCGCGCTGCC GACCATCGGG
CGCCAGTTCC ACGACGTCGA CAATCTGTCC TGGGTGATCA CCGCGTATCT GCTGGCGTCC
ACCGCGATGG CCCCGGTGTT CGGCACGCTG AGCGACATCT TCGGCCGCCG CGCCACCATC
ATCAGCGCGA TGGGTCTGTT CATCGCCGGC TCGGTGCTGT GCGCGGTGGC GCCGAACATG
AGCGTGCTGA TCGTCGCGCG CGTGCTGCAG GGGCTCGGCG GCGGCGGCAT CCTGCCGATC
GTGCAGACCG TGATCTCCGA CGTGGTCACC CCGCGCGAAC GCGGCCAGTA CCAGGCGTAT
TTCTCCGGAG TCTGGGTCGC CGCCTCGATC GGCGGACCGG TGATCGGCGG GGTGTTCGCC
GAACATCTGC ACTGGTCGCT GATTTTCTGG ATCAACCTGC CGCTCGGGGT CGGCGCGCTG
GCGCTGCTGC TGCCGAAGAT GGGCAAGATC CCGGTGTTTC ATCGCCGCCG CAAGGTCGAC
TGGATGGGCG GGCTGTTGCT GATGGCCGCG GCGGTGGCGG TGATGCTGGT GCTGACCTGG
GGCGGCACGC GGCTGGCCTG GGCGTCGCCG ACGATTCTGG CGATGGCCGG CGCCGCGGCG
TTGCTGGCGC TGCTGTTCGT TTGGCATGCG TTGCACACCG CAGAGCCGTT TTTGCCGCTG
CAACTGATGT CCGGCTCGGT GGTGCCCTTT GCGATGGCCG CCGGCGGCTG CGGCATGGGC
GTGCTGATCG GTCTCACCGT GAACATGCCG CTGTATTACG AAGTGGTCTA TGGGCTGAGC
GCCAGCGCCT CCGGACTGGC GCTGATTCCC ATCGTCGCGG TGTCGGTGCT CGGCGCCGCC
TTCGCCGGCC GCGCGACCAC GCATTGGACG CATTACAAGC GGGTGGCGAT CGCCGGCAAC
TCCTTCTCGG CGGCGATGGC CTGCGGTTTG GCGTTGGCGA CGCCGCTGCC GCTGTGGGCG
CTGCTGATCG GGCTGGGATT GCTGGCGATC GGGCTCGGCA CGGTGTTCTC GATCAGCCTG
GTGTCGATCC AGAACGCGGT GCCGCGGCCG CAGGTCGGCA CCGCCACCGG GGCGATGAAT
TTCTTTCGCG CGCTGATGGC GTCGTTCACG GTGGCGGCGT TCACCACGAT CCTGCTCGGT
TCGCTCGGCG GCGGAATTTC CTTCGGTGCC GAACACCGCC ACGCGGTGGG CGGGATCCCT
GCCGCCGACA TGGTGGCGGC GTTCCGCTAC GTGTTCGCCG CCTCCGCCGC GCTGATGGCC
ACCGCGGCGC TGTGCATGGT GGTGATGGAA GAGCTGCCGC TGGCCGGACC AGCCGTCACG
CCGGATCTCG CCGAATAG
|
|---|
| Protein sequence | MSTSESQGRE SAQQRALPAP IAPPAAPGDI DVAMIAAPPL APAAPLTRAE VRGILLSLLL
AMFLAALDQT IVATALPTIG RQFHDVDNLS WVITAYLLAS TAMAPVFGTL SDIFGRRATI
ISAMGLFIAG SVLCAVAPNM SVLIVARVLQ GLGGGGILPI VQTVISDVVT PRERGQYQAY
FSGVWVAASI GGPVIGGVFA EHLHWSLIFW INLPLGVGAL ALLLPKMGKI PVFHRRRKVD
WMGGLLLMAA AVAVMLVLTW GGTRLAWASP TILAMAGAAA LLALLFVWHA LHTAEPFLPL
QLMSGSVVPF AMAAGGCGMG VLIGLTVNMP LYYEVVYGLS ASASGLALIP IVAVSVLGAA
FAGRATTHWT HYKRVAIAGN SFSAAMACGL ALATPLPLWA LLIGLGLLAI GLGTVFSISL
VSIQNAVPRP QVGTATGAMN FFRALMASFT VAAFTTILLG SLGGGISFGA EHRHAVGGIP
AADMVAAFRY VFAASAALMA TAALCMVVME ELPLAGPAVT PDLAE
|
|---|
| |