| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1762 |
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| Symbol | |
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| ID | 3972259 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 1914032 |
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| End bp | 1915897 |
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| Gene Length | 1866 bp |
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| Protein Length | 621 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637924875 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_531640 |
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| Protein GI | 90423270 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
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| TIGRFAM ID | [TIGR00641] methylmalonyl-CoA mutase N-terminal domain
[TIGR00642] methylmalonyl-CoA mutase, heterodimeric type, beta chain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.223035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCACCA CAACCGACGA CCTGCGGCTG GCGGCCGATT TCGCCCCGGC GACCTATGAC
GACTGGCGCA AGCTGGTCGA CGGCGTTCTC AAGGGCGCGC CGTTCGAGAA GCTGGTCGGC
AAGACCTATG ACGGGCTGAA AATCGATCCG CTCTATCCGC GCGCGCAGGA CGCCACGCCG
ATCGCCGGCC GCGCCGCAGC GGCGCCGTGG CAGATCATGC AGCGGATCGA TCATCCGGAC
GCCGCCAAGG CCAACAAGCA GGCGCTGGAC GATCTCGCCA ATGGCGCCAC CGGCCTAACC
CTGGTGTTCG AAGGCGCCAA TGGCGCGCGG GGCTTCGGCT TACCGGCGAC GCAAGACAGC
ATCGCCACGC TGCTCGAAGG CGTCTATCTC GACGCTGGCA TCGCCGTCGA ATTGCAGGTC
GGACCGCAGG CGCGGATGGC GGCGATCTAT CTCGCCGAGC ACATCAAGGC GGCCGGCACC
GATCCGGCGA CATGCGAGAT CCGCTTCGGG CTGGATCCGA TCGGCGCCTG CGCGGTGTGG
GGTTGCAGCG CCTATAATTG GTGGGAGATC GCGCCGGCCT TCACCGACGC CATCAAGAAG
CTCACCGACG CCGGCTTCAA GGGACCGTTC GCGGTCGCCG ACGGCCGGGT GATCCACGAC
GCCGGCGGCT CCGAGGTGCA GGAGCTGGCC TATGTGCTGG CGGTCGCGGT CAGCTATCTG
CGCGCGCTGG AAGATGCCAA CGTGCCGCTC GACGCCGCGC GGTCGATGAT TTACGCACGA
CTCAGCGCCG ACGCCGATCA GTTCCTGACG CTGGCGAAAT TCCGCGCGCT GCGGCTGTTG
TGGGCGCGCG TCGAGGAAAG CTGCGGCCTT CAGCCAAAGC CGCTGTTCAT CGCCGGCGAA
ACCGCGTGGC GGATGCTGAC GCAGCGCGAT CCTTACGTGA ACATGCTGCG CAATACGGTT
GCGACCTTCG CGGCCGGCCT CGGCGGCGCC AATTCGATCG CCGTGCTGCC GCACACCGCG
GCGCTCGGAT TGCCGGACGC CTTCGCACGC CGCGCCGCGC GCAATACCCA GCTGGTGCTG
CTTGAGGAAT CCAATCTCGA CAAGGTGTCG GATCCGGCCG CCGGCTCCGG CGGCATCGAG
GCGCTGACCA AGCAGCTCTG CGACGCCGCC TGGACGCTGT TCCAGGAGAT CGAGAAGACC
GGCGGCGCGT TCTTCGCGCT CGGCGAAAAC CTGCTGCAGC CCAAGGTCGC GGCGACCCGC
GCCGCGCGGC AGGCGGCGAT CGCCAAGCGT CGCGACGTGC TGACCGGCGC CAGCGAATTC
CCCAATCTGC ACGAGGCCCG CGCCGCGGTG CTGAAGGTCA AGCCGGTCGA AGCCCAGCCC
TACGGCAAGG ACAAGATCAA GTTCAATCCG CTCGCCCCGA TCCGGTTGGC GACGCCGTTC
GAGGCGTTGC GCGACAAGTC CGATCATCTG TTGGCCCGCA AGGGTGCCCG GCCGAAAGTG
TTTTTGGCCA GCCTCGGCAC GCCCGCGGAC TTCACCGCGC GCGCGGGCTT CGCCAAGAGC
TTCTTCGAGA CCGGCGGCAT CGAAGCGATC GACACCGAAG GTTTCGCCGA TCCCGCCGCG
CTCGCCGGCG CCTACACCGC CTCGGGCGCT CCGCTGGTCT GCCTATGCTC CTCCGACAAG
GTCTATGCGA CCGCTGCAAT CGACGCCGCC AAAGCCCTGC ACGCCGCCGG CGCCAAGCAT
ATCTATCTGG CAGGACGCCC CGGCGAGCAG GAGGCCGGCT ATCGCGAGGC CGGGGTGACC
GATTTCATTT TCGCCGGCGC CGACGCGCTG GCGATGCTGA TCGATGCTTA TCGGAGGCTG
GAGTGA
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| Protein sequence | MPTTTDDLRL AADFAPATYD DWRKLVDGVL KGAPFEKLVG KTYDGLKIDP LYPRAQDATP
IAGRAAAAPW QIMQRIDHPD AAKANKQALD DLANGATGLT LVFEGANGAR GFGLPATQDS
IATLLEGVYL DAGIAVELQV GPQARMAAIY LAEHIKAAGT DPATCEIRFG LDPIGACAVW
GCSAYNWWEI APAFTDAIKK LTDAGFKGPF AVADGRVIHD AGGSEVQELA YVLAVAVSYL
RALEDANVPL DAARSMIYAR LSADADQFLT LAKFRALRLL WARVEESCGL QPKPLFIAGE
TAWRMLTQRD PYVNMLRNTV ATFAAGLGGA NSIAVLPHTA ALGLPDAFAR RAARNTQLVL
LEESNLDKVS DPAAGSGGIE ALTKQLCDAA WTLFQEIEKT GGAFFALGEN LLQPKVAATR
AARQAAIAKR RDVLTGASEF PNLHEARAAV LKVKPVEAQP YGKDKIKFNP LAPIRLATPF
EALRDKSDHL LARKGARPKV FLASLGTPAD FTARAGFAKS FFETGGIEAI DTEGFADPAA
LAGAYTASGA PLVCLCSSDK VYATAAIDAA KALHAAGAKH IYLAGRPGEQ EAGYREAGVT
DFIFAGADAL AMLIDAYRRL E
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