| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1717 |
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| Symbol | |
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| ID | 3972370 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1863551 |
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| End bp | 1864429 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637924830 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_531595 |
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| Protein GI | 90423225 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.38263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.104213 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTCCG CCAGCGAGCT GCGATCCGGC AAGACCCACA AGGACGAGAA CTTTCCGGTG
GCGTCCTGGA TCATCCATCC GCGGCACCGG GACCTGATCC TGGCGTTCTA CAATTTCGTT
CGCACCGCGG ATGACATCGC CGACCACGCC GAACTCGCCG ACCAGGCTAA GCTGAGCTAT
CTCGATCTCC TGGAATCCGA ATTGCTCGGG CAGGGCGACA GCCAGCCGGA AGCGGTGAAT
CTGCGTCGCG CCTTGGCCGC GCGGGCGATG CCGCCGCGGC ACGCGCTCGA CGTGCTGATC
GCGTTCCGCA TGGACGTCAC CAAGTCGCGC TATGAGACCT GGGACGAGGT GATCCACTAC
TGCCGCTATT CGGCCATGCC GGTCGGCCGC TTCATGTTGG ACGTTCACGG CGAGAGCACC
GCCACCTGGC CGGCCTCCGA TGCGCTGTGC GCCGGCTTGC AGATCAACAA TCATCTGCAG
GACTGCGGCA AAGACTACAA AGCCCTCAAT CGGGTTTATC TGCCGCGCGA CGCGCTGGCG
CAGGCCGGCG CCTCCGCCGA GGAACTGGGA CAGCCGCGCG CCTCGGCGGC GTTGCTGCAA
TGCCTGCACG CGCTGGCGCT GCGCACCGAA GGCCTGCTCA GTGAGGCGAG ATCGCTCAGC
GCCGAGGTCA AGGATGTCCG GCTCGGGCTC GAGGTGGCGG TGATCCAGGC GTTCGCCGAC
AAGATCGTCG GATTGCTCGA GGTGCGCGAT CCGCTGTGCG AGCGCGTCCA CCTCAAGCCG
CTCGATCTAC TGCTCTGCAG CGCCGGCGGC ATTTCCGCGG AGCTCGTCCG CCGCATCATC
GGCCGCCGCA CGGCGGCAAA ACCGGCGCCG CGCGCATGA
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| Protein sequence | MTSASELRSG KTHKDENFPV ASWIIHPRHR DLILAFYNFV RTADDIADHA ELADQAKLSY
LDLLESELLG QGDSQPEAVN LRRALAARAM PPRHALDVLI AFRMDVTKSR YETWDEVIHY
CRYSAMPVGR FMLDVHGEST ATWPASDALC AGLQINNHLQ DCGKDYKALN RVYLPRDALA
QAGASAEELG QPRASAALLQ CLHALALRTE GLLSEARSLS AEVKDVRLGL EVAVIQAFAD
KIVGLLEVRD PLCERVHLKP LDLLLCSAGG ISAELVRRII GRRTAAKPAP RA
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