| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1512 |
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| Symbol | |
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| ID | 3972160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1647559 |
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| End bp | 1651344 |
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| Gene Length | 3786 bp |
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| Protein Length | 1261 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637924627 |
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| Product | hypothetical protein |
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| Protein accession | YP_531393 |
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| Protein GI | 90423023 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGAA CGGCTGCGAA GCTCTGTTGG TCGCGCGCCT GCGAAATCTC GCGGGCGGCG
CGGCGTTGGT TCGGCGCGCC GCGCGGCGGC CTCGCCGGGC TGATGCTGAT GGCAGCGACC
GCCCCGGCGC TGGCGCAGGC GCCGCTGGTG CGAGGCGAGG CGACGCTGTC GGCGGGCGGC
GGCTACGCGC GGCTGGTGCT CAAGCTCAAC GAGGACGTCG AGTCCGACGT GGTGGTGGCC
GGCAGCGTGC TGGTGATTCG CTTCAAGCGG CCGGTCTGGG TTCCGATCGA CAAATTGGCC
GACGCGGTGC CCGACTATGT CGGCTCGGCG CGCCGCGATC CGGATGGCGG CGCGATCCGG
CTGGCGCTGC AACGCAAGGT CACCGTCAAT TCGATGGCCG CCGGCGAACG GCTTTACGTC
GACCTGTTGC CCGACGACTG GAAAGGCGCG CCGCCGGGAT TGCCGCAGGA CGTGCTGAAG
GAATTGTCGG ACCGCGCCCG CGCCGCGGAA AAGGCGTTGC GGCAGCAGCG CGCGGCTTTC
GCCGCCAAGG TGCGGCCGCC GATCCGGGTG CGCGCCGCGG TGCAGCCGAC CTTCGTGCGC
TACGTGTTCG AAATGCCCGA CGGCGTCACC GTCAATTCGA CGCTGAGCGA CCAGAAGTTG
TCCTTGCTGT TCACCGCGCC GCTGACCTTC GATCTGGCCG ATGCCAAGAT CGCGGCGCCG
CCGAACATTG CCTCGATCAT CCAGGCGACC GATGTCGACC GCTCGGCGGT CGAGATCGGA
CTGATCGGCG ATGTCGACGT GCATTCGTTC CGCGAGGAGA AGAACTACAT CGTCGACATC
GGCTTCCAAC AATCCGAGCC GGCGCAGTCG CTGCCGGCGG CGATCAGCCG GCTGCAATCC
GAGCTGCGCG GCGTTCGCGC GTCGCCGCCC GGCGAAATTG CGCCGCCGAC CTCGGAGTTG
ATCGCGCAGC AGATGAAATC CGACCCGAAG CCGGCCGCAA AGGTCGAAGC CAAAGTCGAG
CCCAAGGTCG AAGCCAAGGT CGAGCCCAAG GTCGAAGCCA AGGCCGAGCC GAAGGCCGAA
CCCAAGGCCG AACCTAAGGC CCAAGCCAAG GTCGAAGCCA AGGTTGAGCC CAAGGTTGAA
CCCAAGGTTG AACCCAAGGT TGAACCCAAG GTTGAACCCA AGGTTGAACC CAAGGTTGAA
CCCAAGGTTG AACCGAAGGC CGGGGTGAAG GCGGAGGCGG CGGCGACCCC GCCGGAGACC
GCCGCCGCGG CGGTCGCGTC CAAGCCGGCG GCGGTCGCCG ACAAGCCGGC GCCGCCCGCC
GTGGTCCCGC CGCCGCCCGC AGCGGCGGAA GCCGGCCCGG CGGTCGATAT TCAGCGCACC
AATGCCGGGC TGCGGTTGCA GTTTCCATTC GCGGCTCCGG TGGCCGGCGC GCTGTTCCGG
CGCGCCGATA CGCTGTGGCT GGTGTTCGAT TCCAAGAAGC TGGTCGATCT CGAGCCGGTG
CGCCGCCAGG GCGGCTCGAA CATCGCCGAG ATCTCCGGCC TCGCGCTGCC GACCGGGCAG
GCGGTGCGTA TCCGGCTCAG CCGGCCGCAA TTGGCGGCGC TGACCGGCGA CGCGCAGGGC
TGGACGCTGA CCTTCGCCGA CGCCGTGCAA TCGCCGTCGC TGCCGCTGCA GGCGGTGCGC
AACATCTCCG ATCCGGCGCG CGCCAACGTC ACCATTCCGC TGCCGGGCGC CGGCACATTG
CACCGGGTCG TCGATCCCGA TGCCGGCGAT ACGCTGATGG TGGTCACCGC GGCGCCGCCG
GCGCGCGGCT TGCTGAAGCG CCAGGACTTC GTCGAATTCG CGCTGTTGGA ATCGCTGCAC
GGCGTGGTGG TGCAGCCGTA TTCCGACGAC GTCACCGCGG TGGTCGCCGA CGACAAGGTG
GTGGTGAGCC GGCCCGGCGG GCTGACGCTG TCGTCGGCGT CGTTCGGCGG CAACGAGCGC
GGCACCGCGC GCACCCGCCC GATCTTCGAC GTCAACGAGT GGCAGAAGAA CCAGCAGGGC
AGCTTCGCCG AGCGACAGGA CGAACTGATC AACGCTTCCG CGAAAGCCAG CGGCGAGGCG
CGCACCATGG CGCGCTACGA GCTGGCGCGG TTCTACATGG CGCGCGGCAT GTATGCCGAG
GCCAAGGGCG TCATCGACCT GGTGCTCGGC GACTTGAAGT CGGGCCAGGA CGATCCGATC
GCGCTGATCA TCCGCGCCGC CTGCAGCGTG ATGATCGGCC ATCCCGACGA GGCGCTGAAA
GACCTCGGCA ATCCGGCGAT CGGCGCCAAC TTCGACGCCC AGCTGTGGCG GGCGCTGGCG
GCGGCCAAGC AGGGCAAATG GCCGGAAGCC CGCGAAAAGC TGAAGAACGT CGAATTCATC
ACCAACGGCT TGCCGCTGGA TATGCAGCGC GTGGTGATCA GCGAGGCGAT GCGCGCGTCG
CTGGAAGTCA ACGACTATGC CGGCGCCACC AATCTGTCGA GCGAACTCGA TCATGTCGGC
GTGCCGAGCG AGTTGCAGCC GGCGGTGGCG GTGTTGCGCG GCCGGCTCGA CCAGGCGCTG
GGGCGCGAGG GCGACGCGCT GGTGAAATAT CGCGAGGCCA TCGTGTCCGC CAACCGCGCC
GCGGCGACCG AAGCCAAGCT GCTCGACCTG ATGCTGCGGC AGAAGCGCGG CGAGATCTCG
CCGGCCGACA TGCTGCCCGA ACTGGAGCAG CTGGCGTTGA CCTGGCGCGG CGACGAGATC
GAGGTGCGCG CCCAGCAGAT GATGGCGAAG ATGTATGCCG ATCTCGGCCG CTATCGGGAA
GCGCTGGCGG CCGCGCAGCT CGCCACCGAA CTGCTGCCGA ATTCGCAGAG CGCGCGGCAA
GCCCAGGACG ACGCCTCGGC GCTGTTCGCG CAAGTCTATC TCAGTCAGAA GGGCGACGAC
ATGGCGCCGA TCGACGCCTT GGCGATGTTC TACGACTACC GCGGCCTGAC CCCGATCGGC
CGCCGCGGCG ACGAAATGAT CCGAAAGCTG GCGGACCGGC TGGTCGCGGT CGACCTGCTC
GATCAGGCCG CCGAACTGTT GCAGTACCAA GTCGATCGCC GCATGGAAGG CGCGGCGCGC
GCCCAAGTCG CGGCCCGGCT CGCCATGGTC TATCTGATGA ACCGCAAGCC GGACCGCGCC
ATCACCGCGT TGCGCTCGAC GAGGATCGCC GACCTGTCCG GCGAATTGCG TACCCAGCGG
CTGTTACTGG AGGGCCGCGC GCAGAGCGAC ATCGGCCGCC ACGATCTGGC GCTCGATATC
ATCTCCAACA TCTCCGGCCG CGAGGCGATC CGGCTGCGCG CCGACATCTA TTGGGCGAGC
CGGCGCTGGC GCGAGGCCTC CGAACAGATC GAACTTTATC TCGGCGACCG CTGGCGCGAC
TTCAAGCCGC TCGACGCCGC CGAGAAGAGC GACGTGATCC GCGCCGTGGT CGGCTACGCC
TTGGCCGAGG ACGCGCTCGG GCTCGGCCGG TTCCGCGAGA AATTCGCGCC GTTGATGACC
GGCGGCGCCG ACAAGGTGGC GTTCGACGTC GCCTCGGCCC CGTCCGACGG CAGCAACGCC
GAATTCAGCG CGATCGCCAA GATGGCGGCC AGCGTCGACA CGCTGGACGG CTTCCTGCGC
GAGATGAAGG CGCGCTTCCC GGACGCCAGC GCCAAGGTGA TCCTGCCGCA GCAACCGCCG
GCCGACAGCG ACACCACCGG GTCGCTGCCG TCGATCGCGG TGCGGCAGAT TCCGCTGGGA
CGGTAG
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| Protein sequence | MARTAAKLCW SRACEISRAA RRWFGAPRGG LAGLMLMAAT APALAQAPLV RGEATLSAGG
GYARLVLKLN EDVESDVVVA GSVLVIRFKR PVWVPIDKLA DAVPDYVGSA RRDPDGGAIR
LALQRKVTVN SMAAGERLYV DLLPDDWKGA PPGLPQDVLK ELSDRARAAE KALRQQRAAF
AAKVRPPIRV RAAVQPTFVR YVFEMPDGVT VNSTLSDQKL SLLFTAPLTF DLADAKIAAP
PNIASIIQAT DVDRSAVEIG LIGDVDVHSF REEKNYIVDI GFQQSEPAQS LPAAISRLQS
ELRGVRASPP GEIAPPTSEL IAQQMKSDPK PAAKVEAKVE PKVEAKVEPK VEAKAEPKAE
PKAEPKAQAK VEAKVEPKVE PKVEPKVEPK VEPKVEPKVE PKVEPKAGVK AEAAATPPET
AAAAVASKPA AVADKPAPPA VVPPPPAAAE AGPAVDIQRT NAGLRLQFPF AAPVAGALFR
RADTLWLVFD SKKLVDLEPV RRQGGSNIAE ISGLALPTGQ AVRIRLSRPQ LAALTGDAQG
WTLTFADAVQ SPSLPLQAVR NISDPARANV TIPLPGAGTL HRVVDPDAGD TLMVVTAAPP
ARGLLKRQDF VEFALLESLH GVVVQPYSDD VTAVVADDKV VVSRPGGLTL SSASFGGNER
GTARTRPIFD VNEWQKNQQG SFAERQDELI NASAKASGEA RTMARYELAR FYMARGMYAE
AKGVIDLVLG DLKSGQDDPI ALIIRAACSV MIGHPDEALK DLGNPAIGAN FDAQLWRALA
AAKQGKWPEA REKLKNVEFI TNGLPLDMQR VVISEAMRAS LEVNDYAGAT NLSSELDHVG
VPSELQPAVA VLRGRLDQAL GREGDALVKY REAIVSANRA AATEAKLLDL MLRQKRGEIS
PADMLPELEQ LALTWRGDEI EVRAQQMMAK MYADLGRYRE ALAAAQLATE LLPNSQSARQ
AQDDASALFA QVYLSQKGDD MAPIDALAMF YDYRGLTPIG RRGDEMIRKL ADRLVAVDLL
DQAAELLQYQ VDRRMEGAAR AQVAARLAMV YLMNRKPDRA ITALRSTRIA DLSGELRTQR
LLLEGRAQSD IGRHDLALDI ISNISGREAI RLRADIYWAS RRWREASEQI ELYLGDRWRD
FKPLDAAEKS DVIRAVVGYA LAEDALGLGR FREKFAPLMT GGADKVAFDV ASAPSDGSNA
EFSAIAKMAA SVDTLDGFLR EMKARFPDAS AKVILPQQPP ADSDTTGSLP SIAVRQIPLG
R
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