| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1489 |
|---|
| Symbol | |
|---|
| ID | 3972273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1627342 |
|---|
| End bp | 1629582 |
|---|
| Gene Length | 2241 bp |
|---|
| Protein Length | 746 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637924604 |
|---|
| Product | flagellin |
|---|
| Protein accession | YP_531370 |
|---|
| Protein GI | 90423000 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1344] Flagellin and related hook-associated proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.671791 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTTA TCCTCTCCTC AGCCGTGCGT CAGAACCTGC TCTCGCTGCA GTCCACTGCC
GACCTGCTTG CTACCACCCA GAGCCGCCTG TCGACCGGCA AGAAGGTCAA CACCGCGCTC
GACAACCCGA CCAACTTCTT CACCGCCTCC TCTCTCGACA GCCGCGCCAG CGACATCAAC
AATTTGCTCG ATGGCATCGG CAACGGCGTG CAGATCCTGC AGGCCGCCAA CACCGGCATC
ACCTCGCTCA ACAAACTCGT TGACTCCGCG AAGTCGATCG CCAACCAGGC GCTGCAGACC
GTGTCGGGCT ACACCACCAA GTCGAACGTC TCGACCACGA TCGCCGGCGC CACCGCCGAC
GACATCCGCG GCACCACCAC TTACGCCAAC GCGTTCGCAG TCAGCGGCGT CGTCACCGAC
GGCACCTCCG GCGGCGCTTC GCCGATCACG ACGGCCACCA CCCTCGGCGG CGTTGCTGGA
GCTCTGGTTG GAGTTGCGGC CACCGCGGGC GACGGCTCCA CCGCTCTGTC CGGCACCGTC
ACACTGGCTG CCGGCGCCAC TGCGACCACT TTGTTGGCCG CCGCGGCTCC GAAAGACGGC
GACGTTCTGG TCGTCAACGG CAAGTCCATC ACCTTCAAGG GCGGTGCGGC TCCTGCGGCG
GCCGGCGTTG CGACTGGCTC GGGCGTCAGC GGCAACATCG TCACCGATGG ATCCGGCAAC
TCGCAGATCT ATCTGACCGG CGGCACCGTT GCCGACGTTC TCAAGGCCGT CGATCTGGCC
AGCGGCGTTG CCAAGACCGT GAATAGCGCG GGCGCGGCGA CCATCACCGG CTCGACCGCG
GCGTTTGCCG CCGGCGTGCT GACGGTCAAC TCCTCGACCG GTGCCGATCT CAGCGTCACC
GGCAAGGCCG ATCTGCTCAA TGCCCTCGGC CTGACCACCT CGATCGGGTC CGGCAACGTC
TCGGTCGGCG CCGCTCGCAC CACCGCTGCG ACCACCACCT CGAACCTGAT CCAGGACGGT
TCGACCCTGA ATGTGAACGG CAAGACGATC ACCTTCTCGA ACGCTTACCA GCCGCTTCCG
GCCAACGTTC CGTCCGGTTC CGGCATCGAG GCCGGCAGTC ATCTGCAGAC CGATGGCAAG
GGCAACTCGA TCGTCTATCT GCAGGGTGCG ACCATCGCTG ACACGTTGAA AGCGATCGAC
ATTGCGACCG GCGTGCAGAC GGCGACGAAT GCCGCCGGCA TCTCGACCCT GGCGACCGCC
AGCGGCGCCT CGGCGTCCAC CGTGGCGGCG AACGGCACGC TGAAGCTCAG CACCGGCACG
TTGTCGGATC TCAGCATTGC CGGCGGCGTC GGCAATGCAT TGTCGGCACT TGGTCTCGAC
GGCCCGACCC ACACCAGCAG CACGTTCACT GCGACGCGTG CGGCCGGCGC CGGCGGCATC
GACGGCAAGA CCCTGACCTT CTCTTCCTTC AACGGCGGAA GCGCGGTCAA TGTCACGCTC
GGCGATGGCA CCAACGGAAC CGTCAAGACG CTGGCCCAGC TCAAGACTGC GCTGCAAGCC
AACAACCTCG ACGCGACCGT GGATGCCTCC GGCAAGCTGA CGATCTCGGC GGGCAACGAC
TATGCGTCGT CGACGCTGGG TTCGACCCTG TCCGGCGGCT CGATCGGCGG CACCTTGACC
ACCTCGACCA CCTTCACCAT CGCGGCGGCG CCGGTTGCCG ACACGGTGGC GCAGACCACT
CGCGCCAATC TCGTGACGCA GTACAACAAC ATCCTGAACC AGATCAACAC CACGGCGCAG
GATGCCTCGT TCAACGGCGT CAACCTGTTG AACGGCGACA ACCTCAAGCT GACCTTCAAC
GAAACCGGCA AGTCCACGCT GAACGTGCAG GGCGTGACCT TCAACGCAGC AGGCCTCGGC
CTGTCGAACC TGACTGGCGG CACCGACTTC ATCGACAACT CGAACACCAA CAAGACTTTG
GCAACTCTGA CGACCGCCAG CACCGCGCTG CGTTCGCAGG CCTCGGCCTT GGGTTCGAAC
CTGTCGATCG TGCAGTTGCG TCAGGACTTC TCCAAGAGCC TGATCAACGT GCTGCAGACC
GGCGCGTCGA ACCTGACGCT GGCCGACACC AACGAGGAAG CGGCCAACAG CCAGGCGCTG
TCGACCCGCC AGTCGATCGC GGTGTCAGCC TTGTCGCTGG CCAACACCTC GCAGCAGAGC
GTGTTGCAGC TGCTGCGCTA A
|
|---|
| Protein sequence | MSVILSSAVR QNLLSLQSTA DLLATTQSRL STGKKVNTAL DNPTNFFTAS SLDSRASDIN
NLLDGIGNGV QILQAANTGI TSLNKLVDSA KSIANQALQT VSGYTTKSNV STTIAGATAD
DIRGTTTYAN AFAVSGVVTD GTSGGASPIT TATTLGGVAG ALVGVAATAG DGSTALSGTV
TLAAGATATT LLAAAAPKDG DVLVVNGKSI TFKGGAAPAA AGVATGSGVS GNIVTDGSGN
SQIYLTGGTV ADVLKAVDLA SGVAKTVNSA GAATITGSTA AFAAGVLTVN SSTGADLSVT
GKADLLNALG LTTSIGSGNV SVGAARTTAA TTTSNLIQDG STLNVNGKTI TFSNAYQPLP
ANVPSGSGIE AGSHLQTDGK GNSIVYLQGA TIADTLKAID IATGVQTATN AAGISTLATA
SGASASTVAA NGTLKLSTGT LSDLSIAGGV GNALSALGLD GPTHTSSTFT ATRAAGAGGI
DGKTLTFSSF NGGSAVNVTL GDGTNGTVKT LAQLKTALQA NNLDATVDAS GKLTISAGND
YASSTLGSTL SGGSIGGTLT TSTTFTIAAA PVADTVAQTT RANLVTQYNN ILNQINTTAQ
DASFNGVNLL NGDNLKLTFN ETGKSTLNVQ GVTFNAAGLG LSNLTGGTDF IDNSNTNKTL
ATLTTASTAL RSQASALGSN LSIVQLRQDF SKSLINVLQT GASNLTLADT NEEAANSQAL
STRQSIAVSA LSLANTSQQS VLQLLR
|
|---|
| |