| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1189 |
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| Symbol | |
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| ID | 3969144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | + |
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| Start bp | 1298912 |
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| End bp | 1300057 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637924300 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_531071 |
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| Protein GI | 90422701 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.563711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCGTG TTGCCTGCCC GTTGCTGATC GCCGCGTTCC TCGTCGCTGG TTCGCCGGCA
TCTGCCCAGA TGCCCGGCGG CGGGCCGCCC GCGGTCGGCA CGGTAGTGGC GGCGCCGCAA
CCGATCACCG AGACCACCGA ACTCAACGGC CGGGTGCAGG CGATCGGCCG CGTCGACCTC
ACCGCACGGG TCAATGCCTT CCTGCAGGAG CAGCTGTTCG TCGAAGGCGC CGAGGTGAAA
AAGGGCGACC TGTTGTTCCG GCTCGAGCAG CCGCCGTTCC AGGCCGACGT CGAAGCCAAG
CGCGCCGCAG TCGCCCAGGC CGAGGCGCAG CTCGACTACG CCGACCTGGC GCTGGCGCGC
GCAGATCAAT TGCTGAAGAC CGCGGCGGGC AGCCAGAGCA CCGCCGACAA CGCCCGCGCG
GCGCAGCGCA CCGCGGCGGC GCAGCTGCGC TCGGCCAAGG CACAGCTCCA GCAGTCGGAA
ATCAATCTCG GCTACACCGA GATCCGTTCG CCGATCGACG GCCGCATCGG CCGCATCCAG
GTCACCGTCG GCAACGTGGT CGGCGCCTCG TCCGGCGTGC TGGCGACCGT GGTCAGCCAG
GACCCGATCC ATGTGGTGTT TCCGATCTCG GTGAAGCGGC TATTGCTGCT GCGCGAGCAA
TTGGCGACGC AAGGCGGCTT CGACGCGGTG CGGCTGCGAT TGCGGTTGCC CGACGGCCGG
CTCTACGGCG AAGTCGGCAA ATTGCAGTTC GTCGACATCA ACGTCGCCCG CGACACCGAC
AGCATCATCC TGCGCGGCGT CATCGCCAAT CCGCTGTTGC CGGGCGGCGG CCGCGAACTG
ACCAACGAGG AAATGGTGCG GGTGGTGCTG GAAAACGTCA CGCCGCGCGA ATTGATGACG
ATCCCGCGTG CTGCGATCTT GACCGATCAG CAAGGCGACT ACGTCTATGT GGTCGGCGAC
AAAGACATCG CCCAGCCGCG CCGGGTCAAG CTCGGGCAAT CCACCGCCGA CACCGCGGTG
ATCAACAGCG GCCTCAATGG CGGCGAACGC GTCGTCGTTG AAGGCCTGCA GCGGGTGCGG
CCCAACGCGC CGGTGGCGCC GTCGCCGATC GACGCCCAGG CCTCCCGGCC GAACAGCAAG
GGCTGA
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| Protein sequence | MLRVACPLLI AAFLVAGSPA SAQMPGGGPP AVGTVVAAPQ PITETTELNG RVQAIGRVDL
TARVNAFLQE QLFVEGAEVK KGDLLFRLEQ PPFQADVEAK RAAVAQAEAQ LDYADLALAR
ADQLLKTAAG SQSTADNARA AQRTAAAQLR SAKAQLQQSE INLGYTEIRS PIDGRIGRIQ
VTVGNVVGAS SGVLATVVSQ DPIHVVFPIS VKRLLLLREQ LATQGGFDAV RLRLRLPDGR
LYGEVGKLQF VDINVARDTD SIILRGVIAN PLLPGGGREL TNEEMVRVVL ENVTPRELMT
IPRAAILTDQ QGDYVYVVGD KDIAQPRRVK LGQSTADTAV INSGLNGGER VVVEGLQRVR
PNAPVAPSPI DAQASRPNSK G
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