| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_1119 |
|---|
| Symbol | fliR |
|---|
| ID | 3969553 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 1220975 |
|---|
| End bp | 1221721 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637924230 |
|---|
| Product | flagellar biosynthesis protein FliR |
|---|
| Protein accession | YP_531002 |
|---|
| Protein GI | 90422632 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
|---|
| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.294704 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.892593 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCGCAC CGGCGTCGAT CTCGGTGTTG GTGGTGTTCC TGATCTTCTG CCGGGTCGGC
ACCTGCATGA TGGTGGCGCC GGGCTATTCC AGGTCGAACA TTCCGGTGCA GGTCAGGCTG
TTCTTGGCGC TCAGCGTCAC GCTGATGTTG TCGCCTTTGC TCGAAGCCAC GGTCCGGCCG
GCGCTGGAGG GCGCGGCCGC GCCGGCGATC CTCGGCCTGA TCTGGTCGGA ACTGGTGGTC
GGACTGATGA TCGGCTTGAC CGCGCGGGTG TTCTTCGCCG CGCTGGAGAC CTTGGCCACC
TTCGTCGCAT CGGCGATCGG GCTCAATCTG GCCGGCACGG TGGACGACGG CGAACACGTG
CCGGCGTTGG TGCCGTTGAT CACCGTGTCG GCGACGGTGC TGTTCTTCAT GACCGAGCAG
CATTGGCAGC TGCTGCGCGG CCTGCTCGGG TCGTACCGGA TCTGGTTGCC GGCGACCGGC
GTCGGCATCG GGGACGGCGT TGCCCAGCTG GTCGATCACC TGTCGCAGGC CTTCACGTTG
GCGCTGCGGG TGGCAAGCCC GTTCGTGATC TATTCGGTGA TCGTCAATCT GGCGATCGGG
CTCGCCAACA AGCTGACGCC GAGCATTCCG GTGTACTTCA TATCGCTGCC CTTCGTGTTG
TTCGGCGGGT TGCTGCTGCT GTATCTCACC GGCCGCGAAA TGGTGCTGCA GTTCTCCATC
GCCTTCGCGG CGTGGCTCGC GGGGTGA
|
|---|
| Protein sequence | MIAPASISVL VVFLIFCRVG TCMMVAPGYS RSNIPVQVRL FLALSVTLML SPLLEATVRP
ALEGAAAPAI LGLIWSELVV GLMIGLTARV FFAALETLAT FVASAIGLNL AGTVDDGEHV
PALVPLITVS ATVLFFMTEQ HWQLLRGLLG SYRIWLPATG VGIGDGVAQL VDHLSQAFTL
ALRVASPFVI YSVIVNLAIG LANKLTPSIP VYFISLPFVL FGGLLLLYLT GREMVLQFSI
AFAAWLAG
|
|---|
| |