Gene RPC_1100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1100 
Symbol 
ID3969573 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1203021 
End bp1203746 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content67% 
IMG OID637924211 
Producthypothetical protein 
Protein accessionYP_530983 
Protein GI90422613 
COG category[S] Function unknown 
COG ID[COG3334] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.370505 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.545096 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAGCT TTGCGAGATG GCGCGGAATT GCACTGGGCT TGGGATGCTT CGCGCTCTGC 
GCTCAAGCGC CGGCCTTGGC GCAATCCGAG CCCAAGTTGT CGAAGCCGCT GAACCTCAGC
GAATTCGCCA AAGCGTCGGC CAAAGCGTCG GCCGCCAAAT CATCGTCGGC CAAGCCGCCG
TCGGCCGCGC GTTCCCGCGT GGCTGCCAAG CCCGATACGG CGCCAGATCG CGCAGCCGCG
CCAGTGCAGA CCAGCGCCGG CGTCGTCAAG ACCGCGGCGG CGGCACCCGC CGCCGGCGAA
GCCCCGCCGG CTCCGCCGCA AGAGTCCGAC GCCGCAAAAT TCTGCAGCAA CATCGCCGAT
GCGGCGCTGG ATGCCCGCGT CGCCTGGCAG CAGAAGGAAT TGCAGGCGGC CGAGGAAAAA
CTGCGCCAGC GCATCGCCGA ACTCGAAGCC AAGCGCGCCG AATACGAACA GTGGCTGAAG
CTGCGCGAAG ACTTTCTGAA GAAGGCGGAA GACAGCGTGG TCGAAATCTA TTCGCGCATG
GAGCCGGAAG CCGCCGCGCT GCAGATCGCC AGCATGGCCG ACGACACCGC CGCGGCGGTG
CTCGCCAAAC TTCGGGTCCG CAACGCCAGC GCGATCCTCA ACGAAATGGA GCCGGGGCGT
GGCGCCCGTC TCGCCGATAC GTTGGCCGGC ATGCGTCGCG CCGACGATGG GAAGACCAAG
AAATGA
 
Protein sequence
MASFARWRGI ALGLGCFALC AQAPALAQSE PKLSKPLNLS EFAKASAKAS AAKSSSAKPP 
SAARSRVAAK PDTAPDRAAA PVQTSAGVVK TAAAAPAAGE APPAPPQESD AAKFCSNIAD
AALDARVAWQ QKELQAAEEK LRQRIAELEA KRAEYEQWLK LREDFLKKAE DSVVEIYSRM
EPEAAALQIA SMADDTAAAV LAKLRVRNAS AILNEMEPGR GARLADTLAG MRRADDGKTK
K