| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0886 |
|---|
| Symbol | |
|---|
| ID | 3969805 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | - |
|---|
| Start bp | 979513 |
|---|
| End bp | 980433 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637924002 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_530775 |
|---|
| Protein GI | 90422405 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.795308 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACCA ATCCGAGACC CGCCAGGACC CCGACCGATG GTGGTCCGGC GCAGGCCAGC
GCTCCGCTCA AGCCGATCCT AGCCACGCTG CTCGCGGCTC TGCTGAGCGC CGCCGGCGGC
GAGCAGGCCG CGGCGCAGGC GGAACAGCCG GCCAGCGCGC AAGTCATCGT CGCCCGCGCG
ACCAACGCCT GCTTCTCCGA CATGGTCCGG GTCACCGGCT TCTTCGTGCC GCGCCGCGAG
GCGGTCGCCG GCGTCGATCA GGAGGGCGCG CGCATCGCCG AGATCCTGGT GCGCGAGGGC
GACAGCGTCA GCGACAACCA GGAACTGATC CGATTGACCG GGGCGCGTTC GGTGCGCGCG
CCGGCGGCGG GCCTCGTCAT CCAGATCGCC GCCGCGGTCG GCGCGCCGGC CTCGCCGCAG
GCCGGTCCGA TGCTGCGCAT CGCGGTGGGT GGCGAGATCG AACTCGACGC CGAGGTGCCC
GGCATCCACG CGCTGAAGCT CAGCCCCGGC GCGCCGGCGC GGATCAGCCG CGACGACGGC
CCCGACCTCG TCGGCAAGGT GCGGCTGGTG GCGCCGCAGC TCGACCGCGC CACCCAGCTC
GGCCACGTCC GGCTGTCACT CCCCAACAAT CCGCCGCTCA AGGTCGGCAG CTTCGCCCGC
GCCAATATCG ACGCCAGGCG CAGCTGCGGC GTGGCGATCC CGCGCACCGC GGTGGATCGT
CTCGCGGTGC AGGTGGTGAA CGGCAATATC ATCGAGACCC GCAAGGTGCG GGTCGGGCTC
ACCTCGGAGA GTTCGATCGA AATCCTCGAA GGCCTCAAGG AGGGCGAGAT CGTGGTCGCC
GACGCCGGCA CCTCGCTGCA CGACGGCGAC CAGGTCAAGG CGCTGTTCGC CGACGACCTC
GACCGCACGC GGGTGCGCTG A
|
|---|
| Protein sequence | MPTNPRPART PTDGGPAQAS APLKPILATL LAALLSAAGG EQAAAQAEQP ASAQVIVARA
TNACFSDMVR VTGFFVPRRE AVAGVDQEGA RIAEILVREG DSVSDNQELI RLTGARSVRA
PAAGLVIQIA AAVGAPASPQ AGPMLRIAVG GEIELDAEVP GIHALKLSPG APARISRDDG
PDLVGKVRLV APQLDRATQL GHVRLSLPNN PPLKVGSFAR ANIDARRSCG VAIPRTAVDR
LAVQVVNGNI IETRKVRVGL TSESSIEILE GLKEGEIVVA DAGTSLHDGD QVKALFADDL
DRTRVR
|
|---|
| |