| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0861 |
|---|
| Symbol | |
|---|
| ID | 3969819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB18 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007925 |
|---|
| Strand | + |
|---|
| Start bp | 948880 |
|---|
| End bp | 950424 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637923977 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_530750 |
|---|
| Protein GI | 90422380 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACTGG AAACCATCCT GCGCGCGCAG GCGGTGCGCT TCCCCGACAA GACCGCGTTG
GTCTGCGGCA ATGAGCGCAT CGCCTATCGC GATCTCGAGC GCCGCATCGG CCACGTCGCC
AGCGGGCTGC GGCAACACGG GCTCGGTGCG GGCGACCGCA TCGTGGTGTT TCTCAACAAC
GGCGTCGAGA TCGTCGAATT GTTCTACGCG GCGTTCTCGC TTGGCGCCAT CGTGGTGCCG
GTCACGACAA GGCTGACATC GCACGAGGTG CAGCACATCT GCGCCGACAG CCAGCCGTCT
GCCATCGCGT TTGAAGGCCC GGGCGACGCG ATCCAAGGCG TGCTCGCGGT CCATCCCGAC
GCGCTGCGGA TCGCGGTGGG TCAAAGTGCG GAGGGCGCGA TCGACTATGC CAGCCTGCGC
GAGGCCGAGA TCGCGCCGTT GCCGCTGTTG TCGGTGCAAT CCGACGACGC GGTGATCATG
TACACCTCGG GCACCACCGG CAGCCCGAAG GGCGCGATCA TCACCCACGC CAATATCGTT
ACCCAGCATT GCTTCATCAA TGCGGTGGAG TGGGGGATTT CGCGCGACGA TCGTTATCTG
GTCACCACGC CGCTGGCGCA TCGCACCGGC TTCGCGCGGC TGTCCAACGC GTTGACGCTC
GGCGGCACGC TGGTGGTGAT GAAGAAATTC GATCCCAAGC AGACCATCGA CACCATCGAC
CGCGAACAGA TCAGCGTGAT CGGCATGGTA CCGACGGTGT GCCGGATGAT GCTGCCACAG
ATCGAAGCCG ATCCGGACAA ATGCGCGTCG CTGCGCCGCA TCGTGGTCAC CGGCGAAGCC
TTCCCGGTCG AGCTGAAGCG CCGCTTCATC GCGCTGTTGC CGCAGGTGCG GCTGGTGTCG
TTCTTCGCGA TGACCGAAGT CGGCGGGGTG ACGTCGCTGT CGCACGAGGA GCAGTTCGAT
CACGCCGCTT CGATTGGCCG GCCGACGCCG GGCGTCGAAG TGCGGATCGT CGACGACGCC
GGCAACGCCG TCGCCACCGG CGAGGCCGGC GAGCTCTTGG TGCGGGTCGG CGAACCCGGC
CGCTATTCGG TGATGCGCGG CTACTACAAC CGCCCGGAAG AGACTGCGAA AGCGATCGAG
GACGGCTGGA TCCGCACCGG CGACGTCGCC CGCGCCGATG ACGAGGGCTA TCTCTATATC
GTCGACCGCA AGAAAGACAT GGTGCTCAGC GGCGGCTTCA ACATCTACAC CAAGGAGGTC
GAGCTCGCCT TGCTGGCCAA TCCGGTAGTC GCCGAGGCGG CGGTGATCGG CATTCCGGAC
GCGATCTATG GCGAGGCGGT GGTGGCCTTT GTCGAGCCGT TGCCGGGCAT GACGCCGACG
CCGCAATCGA TCGTCGACGG CGTGCGCGGC CTGGTGGCCG GCTACAAGAA GCCGAAATAC
GTCTTCATCG TCGACGAACT GCCGCGCAAT TCGCTGGGCA AAGTCTTGAA GCGCGAGTTG
CGCGACAAGG TCGGCGAGCT GCTGAAAACG CCTGAGGCGA CCTGA
|
|---|
| Protein sequence | MRLETILRAQ AVRFPDKTAL VCGNERIAYR DLERRIGHVA SGLRQHGLGA GDRIVVFLNN
GVEIVELFYA AFSLGAIVVP VTTRLTSHEV QHICADSQPS AIAFEGPGDA IQGVLAVHPD
ALRIAVGQSA EGAIDYASLR EAEIAPLPLL SVQSDDAVIM YTSGTTGSPK GAIITHANIV
TQHCFINAVE WGISRDDRYL VTTPLAHRTG FARLSNALTL GGTLVVMKKF DPKQTIDTID
REQISVIGMV PTVCRMMLPQ IEADPDKCAS LRRIVVTGEA FPVELKRRFI ALLPQVRLVS
FFAMTEVGGV TSLSHEEQFD HAASIGRPTP GVEVRIVDDA GNAVATGEAG ELLVRVGEPG
RYSVMRGYYN RPEETAKAIE DGWIRTGDVA RADDEGYLYI VDRKKDMVLS GGFNIYTKEV
ELALLANPVV AEAAVIGIPD AIYGEAVVAF VEPLPGMTPT PQSIVDGVRG LVAGYKKPKY
VFIVDELPRN SLGKVLKREL RDKVGELLKT PEAT
|
|---|
| |