Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_0817 |
Symbol | |
ID | 3969851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 899470 |
End bp | 901368 |
Gene Length | 1899 bp |
Protein Length | 632 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637923933 |
Product | putative inner membrane protein translocase component YidC |
Protein accession | YP_530707 |
Protein GI | 90422337 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0706] Preprotein translocase subunit YidC |
TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain [TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.75563 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGACA ACCGCAACAC CATTCTTGCC GTCATTCTGT CGGGCCTCGT GCTGCTCGGC TGGCAATATT TCTTCAACAT CCCGCAGATG GAGAAGCAGC GCGCCGCCGA GCTCGCCAGC AAGAGCCAGG CGGTGAACCC GGCGCAACCG CAAGGCGCCC AGCCCGCCAC GCCGGCGGCC CCGGGCGCCG CGATCCCGCA GCCCAACGCC GCAACCGCGC CGGCCGGCTC CGCGCCGAAC GCCATCCAGC CCCAGGCCAA CACCCCGGTG GTCAGCCGCG AGGCCGCACT CGCCGCCTCA CCGCGGGTCA AGATCGACAC CCCCCGGCTC AGCGGCAGCA TCGCGCTGAA GGGCGCCCGC ATCGACGATA TCGCGCTGGT CCAGTTCCGC GAAACGGTCG ATCCGAAATC GCCGGCGATC GAGCTGTTCT CGCCGTCGGG CTCGGCCAAT CCCTATTACG CGGAATTCGG CTGGGTCGCC GCCGCCGGCA CCTCGGTGAA GATTCCCGAT CAGAACACCC AATGGGAGCA GGACGGCACC GGCAGCCTGA CGCCGAACCA TCCGGTGACG CTGAAATACG ACAACGGCGA AGGCCTGACC TTCCGCCGCA CCATTACGAT CGACGAGCGT TATCTGTTCA CCATGAAGGA CGAGGTGACC AACGTCGGCA ACGCCCCGGT CACGCTGTAT CCGTTCGCGC TGATCTCCCG TCACGGCACT CCGCACGTCG CCGGCTATTA CATTCTGCAT GAAGGTCTGG TCGGCTATCT CGGCGAGCAG GGGCTGCAGG AATACGGCTA CAGCAAGATC GACGAGGCCA AGGCGGTCAA CTTCAAGGTC ACCAACGGCT GGCTCGGCAT CACCGACAAA TATTGGGCCG CGGCGCTGTT GCCCGACACC AGCGCGCAAT TGCAGGCGCG GTTCTCGTCG AACCTTGCCA ACAACGTGCG CACCTACCAG ACCGACTATC TGCAGGACGC CCAGACCATC GCGATCGGCG GCACCGGCAC CGCCAATGCG CGATTGTTCG CGGGCGCCAA GGAAGCCGGC ACGGTCGGCA TCAACTTCCC GGCGCTGGGG CTCGGCGGCT ACAACAAGGA TCTCGGCCTC AACCACTTCG ATCTGTTGAT CGATTGGGGC TGGTTCTACT TCATCACCAA GCCGATGTTC GTGGCGCTCG ACTTTTTCTT CCATCTGGTC GGCAATTTCG GCATCGCCAT CCTGCTGGTG ACGGTGATCA TCAAGCTGTT GTTCCTGCCG CTCGCCAACA AATCCTACGC CTCGATGGCC AAGATGAAGG CGATCCAGCC GCAGCTCGCG GCCTTGAAGG AGCGTCATCC GGACGACAAG GCCAAGCAGC AGCAGGAGAT GATGGAGATC TACCGCAAGG AGAAGATCAA CCCGGTCGCC GGTTGCCTTC CCGTGCTGCT GCAGATCCCG GTGTTCTTCT CGCTCTACAA GGTGCTGTTC GTCACCATCG AAATGCGCCA CGCGCCGTTC TACGGCTGGA TCCACGACCT TTCGGCGCCG GATCCGACCA ACCTGTTCAA CCTGTTCGGT CTGCTGGCGT TCGATCCGAC CCATGTGCCG GTGATCGGGC ATTACCTGGT GCTCGGCGCC TGGCCGATCG TGATGGGCAT CACGATGTGG GTGCAGATGA AGCTCAATCC GACCCCGCCG GATCCGACCC AGCAGATGAT CTTCGCCTGG ATGCCGCTGA TCTTCACCTT CATGCTGGCC TCGTTCCCGG CCGGTCTGGT GATCTACTGG GCCTGGAATA ACCTGCTCTC GGTGGTGCAG CAGGGCTACA TCATGCGGCG CAACGGCGTG AAGGTCGAAC TGTTCGACAA TCTGAAAGCC AGCTTCGCCC GCAAAAAGAA GAACGCCAAG GCGACCTGA
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Protein sequence | MTDNRNTILA VILSGLVLLG WQYFFNIPQM EKQRAAELAS KSQAVNPAQP QGAQPATPAA PGAAIPQPNA ATAPAGSAPN AIQPQANTPV VSREAALAAS PRVKIDTPRL SGSIALKGAR IDDIALVQFR ETVDPKSPAI ELFSPSGSAN PYYAEFGWVA AAGTSVKIPD QNTQWEQDGT GSLTPNHPVT LKYDNGEGLT FRRTITIDER YLFTMKDEVT NVGNAPVTLY PFALISRHGT PHVAGYYILH EGLVGYLGEQ GLQEYGYSKI DEAKAVNFKV TNGWLGITDK YWAAALLPDT SAQLQARFSS NLANNVRTYQ TDYLQDAQTI AIGGTGTANA RLFAGAKEAG TVGINFPALG LGGYNKDLGL NHFDLLIDWG WFYFITKPMF VALDFFFHLV GNFGIAILLV TVIIKLLFLP LANKSYASMA KMKAIQPQLA ALKERHPDDK AKQQQEMMEI YRKEKINPVA GCLPVLLQIP VFFSLYKVLF VTIEMRHAPF YGWIHDLSAP DPTNLFNLFG LLAFDPTHVP VIGHYLVLGA WPIVMGITMW VQMKLNPTPP DPTQQMIFAW MPLIFTFMLA SFPAGLVIYW AWNNLLSVVQ QGYIMRRNGV KVELFDNLKA SFARKKKNAK AT
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