| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_0809 |
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| Symbol | |
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| ID | 3969881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 892401 |
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| End bp | 893579 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637923925 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_530699 |
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| Protein GI | 90422329 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.486671 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTCCA ACGCAACCGA CGCCCTCGCC ATCGCCCAGG ACCTGCTGCG CTGCCCGTCG
GTGACCCCCG CCGACGCCGG CGCGCTCGGC GTGCTGGAGC GCCTGCTACA TGCGGCCGGC
TTCGCGGTGC ACCGTGTGAC CTTCAGCGAG CCCGGCACCG CCGATATCGA CAATCTCTAC
GCCCGGATCG GCACCACGGC GCCGCATATC TGCTTCGCCG GCCACACCGA CGTGGTGCCG
CCCGGCGACG AAGCGGCGTG GTCGCACGAT GCGTTTGCCG GCGAGGTGCA CGACGGGCTG
TTGTACGGCC GCGGTGCGGT CGACATGAAG GGCGGCATTG CCTGCAGCGT CGCCGCGGTG
CTGCAGCATC TGGCGACGCA TGGCGGCCAG CCGCACGAGT CAGGCCAAGG CTCGATCTCG
TTTCTGATCA CCGGCGACGA GGAAGACGTC GCGGTCAACG GCACCGTCAA GCTGCTGCAA
TGGGCGGCGG CGCGCGGCGA GACATTCGAT CATTGCGTGC TCGGCGAGCC GAGCAATGTC
GAGGCGCTCG GCGACACCAT CAAGATCGGC CGCCGCGGCT CGTTGTCCGG CACGCTGATC
GTCGACGGCG TGCAGGGCCA CGTCGCCTAT CCGCATCGCG CGTCCAATCC GGTGCCGGAT
ATCGCAGCCC TAATCGTGGC GCTCGGCGCC GAGCCGCTCG ATGCCGGCAC CGACACCTTC
CAGCCGTCGA ATCTGGAATT CACCTCGGTC GACGTCGGCA ATCCGGCGAC CAATGTGATC
CCGGCGCAGG CCCGCGCCAA GTTCAACATC CGCTTCAACG ACCGGCATAG CGCCGAGAGC
CTGCAGACGC TGATCGAAGC CCGCGTGCAA GCCGCCTGCG GCAACCGGAT CCGCGCCCGC
ATCGACTGGC AGCCGTCCAA TGCCGGCGCC TTCGTCACCA AGCCGGGTGC CTTCACCGAT
CTGGTGGCGG CGGCGATCGA GGACGTCACC GGGCGCAAGC CCGAACTCAA CACCGGCGGC
GGCACTTCGG ATGCGCGCTT CATCACGCAT TACTGCCCGG TGATCGAATT CGGCCTGGTC
GGCCAGACCA TGCACAAGAT CGACGAACGC ACCCCGGTCG CCGATCTGGA AACGCTGACG
CAAATCTATC GCGGCGTGCT GCAGCGATAC TTCGCCTGA
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| Protein sequence | MPSNATDALA IAQDLLRCPS VTPADAGALG VLERLLHAAG FAVHRVTFSE PGTADIDNLY
ARIGTTAPHI CFAGHTDVVP PGDEAAWSHD AFAGEVHDGL LYGRGAVDMK GGIACSVAAV
LQHLATHGGQ PHESGQGSIS FLITGDEEDV AVNGTVKLLQ WAAARGETFD HCVLGEPSNV
EALGDTIKIG RRGSLSGTLI VDGVQGHVAY PHRASNPVPD IAALIVALGA EPLDAGTDTF
QPSNLEFTSV DVGNPATNVI PAQARAKFNI RFNDRHSAES LQTLIEARVQ AACGNRIRAR
IDWQPSNAGA FVTKPGAFTD LVAAAIEDVT GRKPELNTGG GTSDARFITH YCPVIEFGLV
GQTMHKIDER TPVADLETLT QIYRGVLQRY FA
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